Package: MSstatsBioData

Version: 1.2.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:MSstatsBioData.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings MSstatsBioData_1.2.0.tar.gz

StartedAt: 2018-10-16 11:13:16 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 11:18:44 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 328.0 seconds

RetCode: 0

Status:  OK

CheckDir: MSstatsBioData.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:MSstatsBioData.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings MSstatsBioData_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/MSstatsBioData.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MSstatsBioData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MSstatsBioData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MSstatsBioData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   5.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
DDA_cardio         115.612  0.520 117.730
SRM_crc_validation  94.744  0.252  95.074
SRM_crc_training    38.320  0.284  38.652
SRM_mpm_training    19.812  0.252  20.168
SRM_mpm_validation  16.500  0.232  16.748
SRM_ovarian         10.500  0.252  10.772
SRM_yeast            7.980  0.212   8.214
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/MSstatsBioData.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL MSstatsBioData
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘MSstatsBioData’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MSstatsBioData)

name	user	system	elapsed
DDA_cardio	115.612	0.520	117.730
SRM_crc_training	38.320	0.284	38.652
SRM_crc_validation	94.744	0.252	95.074
SRM_mpm_training	19.812	0.252	20.168
SRM_mpm_validation	16.500	0.232	16.748
SRM_ovarian	10.500	0.252	10.772
SRM_yeast	7.980	0.212	8.214