Back to Multiple platform build/check report for BioC 3.7
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for blima on tokay2

This page was generated on 2018-10-17 08:38:39 -0400 (Wed, 17 Oct 2018).

Package 158/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
blima 1.14.0
Vojtěch Kulvait
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/blima
Branch: RELEASE_3_7
Last Commit: f9de0e8
Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: blima
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/blima_1.14.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL blima_1.14.0.zip && rm blima_1.14.0.tar.gz blima_1.14.0.zip
StartedAt: 2018-10-16 19:41:28 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:42:26 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 57.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/blima_1.14.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL blima_1.14.0.zip && rm blima_1.14.0.tar.gz blima_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 36846  100 36846    0     0   573k      0 --:--:-- --:--:-- --:--:--  642k

install for i386

* installing *source* package 'blima' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c interpolateSortedVector.cpp -o interpolateSortedVector.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/blima.buildbin-libdir/blima/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'blima'
    finding HTML links ... done
    aggregateAndPreprocess                  html  
    bacgroundCorrect                        html  
    bacgroundCorrectSingleArray             html  
    backgroundChannelSubtract               html  
    backgroundChannelSubtractSingleArray    html  
    blima-package                           html  
    channelExistsIntegrityWithLogicalVectorList
                                            html  
    checkIntegrity                          html  
    checkIntegrityLogical                   html  
    checkIntegrityOfListOfBeadLevelDataObjects
                                            html  
    checkIntegrityOfSingleBeadLevelDataObject
                                            html  
    chipArrayStatistics                     html  
    createSummarizedMatrix                  html  
    doAction                                html  
    doProbeTTests                           html  
    doTTests                                html  
    filterBg                                html  
    getNextVector                           html  
    initMeanDistribution                    html  
    insertColumn                            html  
    interpolateSortedVector                 html  
    interpolateSortedVectorRcpp_            html  
    log2TransformPositive                   html  
    meanDistribution                        html  
    nonParametricEstimator                  html  
    nonPositiveCorrect                      html  
    nonPositiveCorrectSingleArray           html  
    numberOfDistributionElements            html  
    performXieCorrection                    html  
    plotBackgroundImageAfterCorrection      html  
    plotBackgroundImageBeforeCorrection     html  
    quantileNormalize                       html  
    readToVector                            html  
    selectedChannelTransform                html  
    selectedChannelTransformSingleArray     html  
    singleArrayNormalize                    html  
    singleChannelExistsIntegrityWithLogicalVector
                                            html  
    singleCheckIntegrityLogicalVector       html  
    singleNumberOfDistributionElements      html  
    updateMeanDistribution                  html  
    varianceBeadStabilise                   html  
    varianceBeadStabiliseSingleArray        html  
    vstFromLumi                             html  
    writeBackgroundImages                   html  
    xieBacgroundCorrect                     html  
    xieBacgroundCorrectSingleArray          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'blima' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c interpolateSortedVector.cpp -o interpolateSortedVector.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/blima.buildbin-libdir/blima/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'blima' as blima_1.14.0.zip
* DONE (blima)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'blima' successfully unpacked and MD5 sums checked
In R CMD INSTALL