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INSTALL report for bgx on tokay2

This page was generated on 2018-10-17 08:33:14 -0400 (Wed, 17 Oct 2018).

Package 114/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bgx 1.46.0
Ernest Turro
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/bgx
Branch: RELEASE_3_7
Last Commit: 8e6036f
Last Changed Date: 2018-04-30 10:35:07 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bgx
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/bgx_1.46.0.tar.gz && rm -rf bgx.buildbin-libdir && mkdir bgx.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgx.buildbin-libdir bgx_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL bgx_1.46.0.zip && rm bgx_1.46.0.tar.gz bgx_1.46.0.zip
StartedAt: 2018-10-16 19:44:18 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:46:50 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 151.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/bgx_1.46.0.tar.gz && rm -rf bgx.buildbin-libdir && mkdir bgx.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgx.buildbin-libdir bgx_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL bgx_1.46.0.zip && rm bgx_1.46.0.tar.gz bgx_1.46.0.zip
###
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##############################################################################


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100 1100k  100 1100k    0     0  17.2M      0 --:--:-- --:--:-- --:--:-- 19.1M

install for i386

* installing *source* package 'bgx' ...
Untarring Boost header files...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c bgx.cc -o bgx.o
In file included from ../boostIncl/boost/config.hpp:57:0,
                 from ../boostIncl/boost/random/linear_congruential.hpp:22,
                 from ../boostIncl/boost/random.hpp:36,
                 from rand.hh:32,
                 from bgx.cc:25:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(m > 0);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
     ^
../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(b >= 0);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(p > 1);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(a >= 1);
     ^
../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
     ^
../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
     ^
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
     ^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
     ^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
     ^
../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
     ^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::base_type&, IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
     ^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int<IntType>::uniform_int(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(boost::random_number_generator<UniformRandomNumberGenerator, IntType>::base_type&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
     ^
../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real<RealType>::uniform_real(RealType, RealType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
     ^
../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
     ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c bgx_frontend.cc -o bgx_frontend.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3  -std=c99   -O3 -Wall  -std=gnu99 -mtune=generic -c qnorm.c -o qnorm.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c rundir.cc -o rundir.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c sokal.cc -o sokal.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/bgx.buildbin-libdir/bgx/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bgx'
    finding HTML links ... done
    analysis.bgx                            html  
    bgx                                     html  
    mcmc.bgx                                html  
    readOutput.bgx                          html  
    saveAffinityPlot.bgx                    html  
    setupVars.bgx                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'bgx' ...
Untarring Boost header files...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c bgx.cc -o bgx.o
In file included from ../boostIncl/boost/config.hpp:57:0,
                 from ../boostIncl/boost/random/linear_congruential.hpp:22,
                 from ../boostIncl/boost/random.hpp:36,
                 from rand.hh:32,
                 from bgx.cc:25:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(m > 0);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
     ^
../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(b >= 0);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(p > 1);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(a >= 1);
     ^
../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
     ^
../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
     ^
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
     ^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
     ^
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
     ^
../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
     ^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::base_type&, IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
     ^
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int<IntType>::uniform_int(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(boost::random_number_generator<UniformRandomNumberGenerator, IntType>::base_type&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
     ^
../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real<RealType>::uniform_real(RealType, RealType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
     ^
../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
     ^
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs]
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
                     ^
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
 #define BOOST_DO_JOIN2( X, Y ) X##Y
                                ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
 #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
                            ^
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
          BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
          ^
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
     BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
     ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c bgx_frontend.cc -o bgx_frontend.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3  -std=c99   -O2 -Wall  -std=gnu99 -mtune=generic -c qnorm.c -o qnorm.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c rundir.cc -o rundir.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I ../boostIncl    -I"C:/extsoft/include"  -DUSING_R -ffast-math -O3   -O2 -Wall  -mtune=generic -c sokal.cc -o sokal.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/bgx.buildbin-libdir/bgx/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bgx' as bgx_1.46.0.zip
* DONE (bgx)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'bgx' successfully unpacked and MD5 sums checked
In R CMD INSTALL