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INSTALL report for bgafun on tokay2

This page was generated on 2018-10-17 08:33:34 -0400 (Wed, 17 Oct 2018).

Package 111/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bgafun 1.42.0
Iain Wallace
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/bgafun
Branch: RELEASE_3_7
Last Commit: ed3d701
Last Changed Date: 2018-04-30 10:35:07 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bgafun
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/bgafun_1.42.0.tar.gz && rm -rf bgafun.buildbin-libdir && mkdir bgafun.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgafun.buildbin-libdir bgafun_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL bgafun_1.42.0.zip && rm bgafun_1.42.0.tar.gz bgafun_1.42.0.zip
StartedAt: 2018-10-16 19:14:25 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:15:14 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 48.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/bgafun_1.42.0.tar.gz && rm -rf bgafun.buildbin-libdir && mkdir bgafun.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgafun.buildbin-libdir bgafun_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL bgafun_1.42.0.zip && rm bgafun_1.42.0.tar.gz bgafun_1.42.0.zip
###
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install for i386

* installing *source* package 'bgafun' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bgafun'
    finding HTML links ... done
    Calculate_Row_Weights                   html  
    Henikoff_weights                        html  
    LDH                                     html  
    LDH.aap                                 html  
    LDH.aap.ave                             html  
    LDH.amino                               html  
    LDH.amino.gapless                       html  
    LDH.amino.pseudo                        html  
    LDH.groups                              html  
    Weight_Amino                            html  
    add_pseudo_counts                       html  
    amino_counts                            html  
    average_cols_aap                        html  
    bgafun                                  html  
    calculate_pseudo                        html  
    convertAAP.package                      html  
    convert_aln_AAP                         html  
    convert_aln_amino                       html  
    convert_amino.package                   html  
    convert_seq_AAP                         html  
    convert_seq_amino                       html  
    create_colnames_AAP                     html  
    create_colnames_amino                   html  
    create_probab                           html  
    create_profile                          html  
    create_profile_strings                  html  
    pseudo_counts                           html  
    remove_gaps                             html  
    remove_gaps_groups                      html  
    run_between_pca                         html  
    sum_20_aln                              html  
    sum_20_cols                             html  
    sum_aln                                 html  
    top_residues_2_groups                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'bgafun' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bgafun' as bgafun_1.42.0.zip
* DONE (bgafun)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'bgafun' successfully unpacked and MD5 sums checked
In R CMD INSTALL