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INSTALL report for adSplit on tokay2

This page was generated on 2018-10-17 08:32:45 -0400 (Wed, 17 Oct 2018).

Package 15/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
adSplit 1.50.0
Claudio Lottaz
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/adSplit
Branch: RELEASE_3_7
Last Commit: a02e2c9
Last Changed Date: 2018-04-30 10:35:04 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: adSplit
Version: 1.50.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/adSplit_1.50.0.tar.gz && rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=adSplit.buildbin-libdir adSplit_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL adSplit_1.50.0.zip && rm adSplit_1.50.0.tar.gz adSplit_1.50.0.zip
StartedAt: 2018-10-16 19:08:20 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:09:01 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 41.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/adSplit_1.50.0.tar.gz && rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=adSplit.buildbin-libdir adSplit_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL adSplit_1.50.0.zip && rm adSplit_1.50.0.tar.gz adSplit_1.50.0.zip
###
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install for i386

* installing *source* package 'adSplit' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
                                                                             ^
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       throw Tomato(__LINE__, "isis() called with unknown function");
                                                                   ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o adSplit.dll tmp.def adSplit.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/adSplit.buildbin-libdir/adSplit/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'adSplit'
    finding HTML links ... done
    adSplit-internal                        html  
    adSplit                                 html  
    diana2means                             html  
    drawRandomPS                            html  
    golubKEGGSplits                         html  
    hist.splitSet                           html  
    image.splitSet                          html  
    makeEID2PROBESenv                       html  
    print.split                             html  
    print.splitSet                          html  
    randomDiana2means                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'adSplit' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
                                                                             ^
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       throw Tomato(__LINE__, "isis() called with unknown function");
                                                                   ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o adSplit.dll tmp.def adSplit.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/adSplit.buildbin-libdir/adSplit/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'adSplit' as adSplit_1.50.0.zip
* DONE (adSplit)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'adSplit' successfully unpacked and MD5 sums checked
In R CMD INSTALL