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INSTALL report for CNTools on tokay2

This page was generated on 2018-10-17 08:34:17 -0400 (Wed, 17 Oct 2018).

Package 277/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNTools 1.36.0
J. Zhang
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/CNTools
Branch: RELEASE_3_7
Last Commit: 1da9d1d
Last Changed Date: 2018-04-30 10:35:11 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNTools
Version: 1.36.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CNTools_1.36.0.tar.gz && rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNTools.buildbin-libdir CNTools_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CNTools_1.36.0.zip && rm CNTools_1.36.0.tar.gz CNTools_1.36.0.zip
StartedAt: 2018-10-16 19:19:41 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:20:23 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 41.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CNTools_1.36.0.tar.gz && rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNTools.buildbin-libdir CNTools_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CNTools_1.36.0.zip && rm CNTools_1.36.0.tar.gz CNTools_1.36.0.zip
###
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100  775k  100  775k    0     0  11.3M      0 --:--:-- --:--:-- --:--:-- 12.6M

install for i386

* installing *source* package 'CNTools' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c getratios.c -o getratios.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CNTools.dll tmp.def getratios.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'start' in package 'CNTools'
Creating a new generic function for 'end' in package 'CNTools'
Creating a generic function for 'genefilter' from package 'genefilter' in package 'CNTools'
** help
*** installing help indices
  converting help for package 'CNTools'
    finding HTML links ... done
    CNSeg-class                             html  
    RS-class                                html  
    cor-methods                             html  
    diffBy-methods                          html  
    dist-methods                            html  
    genefilter-methods                      html  
    getRS-methods                           html  
    madFilter-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CNTools' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c getratios.c -o getratios.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CNTools.dll tmp.def getratios.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNTools' as CNTools_1.36.0.zip
* DONE (CNTools)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'CNTools' successfully unpacked and MD5 sums checked
In R CMD INSTALL