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INSTALL report for BiRewire on tokay2

This page was generated on 2018-10-17 08:37:40 -0400 (Wed, 17 Oct 2018).

Package 153/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.12.0
Andrea Gobbi
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/BiRewire
Branch: RELEASE_3_7
Last Commit: 5e49405
Last Changed Date: 2018-04-30 10:35:31 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiRewire
Version: 3.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BiRewire_3.12.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.12.0.zip && rm BiRewire_3.12.0.tar.gz BiRewire_3.12.0.zip
StartedAt: 2018-10-16 18:57:30 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:58:25 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 55.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BiRewire_3.12.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.12.0.zip && rm BiRewire_3.12.0.tar.gz BiRewire_3.12.0.zip
###
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install for i386

* installing *source* package 'BiRewire' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
                ^
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
                ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c interface.c -o interface.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiRewire'
    finding HTML links ... done
    BRCA_binary_matrix                      html  
    BiRewire-package                        html  
    birewire.analysis.bipartite             html  
    finding level-2 HTML links ... done

    birewire.analysis.dsg                   html  
    birewire.analysis.undirected            html  
    birewire.bipartite.from.incidence       html  
    birewire.build.dsg                      html  
    birewire.induced.bipartite              html  
    birewire.load.dsg                       html  
    birewire.rewire.bipartite               html  
    birewire.rewire.bipartite.and.projections
                                            html  
    birewire.rewire.dsg                     html  
    birewire.rewire.undirected              html  
    birewire.sampler.bipartite              html  
    birewire.sampler.dsg                    html  
    birewire.sampler.undirected             html  
    birewire.similarity                     html  
    birewire.similarity.dsg                 html  
    birewire.slum.to.sparseMatrix           html  
    birewire.visual.monitoring.bipartite    html  
    birewire.visual.monitoring.dsg          html  
    birewire.visual.monitoring.undirected   html  
    test_dsg                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BiRewire' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
                ^
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
                ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c interface.c -o interface.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiRewire' as BiRewire_3.12.0.zip
* DONE (BiRewire)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'BiRewire' successfully unpacked and MD5 sums checked
In R CMD INSTALL