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INSTALL report for BUMHMM on tokay2

This page was generated on 2018-10-17 08:43:15 -0400 (Wed, 17 Oct 2018).

Package 174/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUMHMM 1.4.0
Alina Selega
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/BUMHMM
Branch: RELEASE_3_7
Last Commit: 16f08d9
Last Changed Date: 2018-04-30 10:35:44 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BUMHMM
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BUMHMM_1.4.0.tar.gz && rm -rf BUMHMM.buildbin-libdir && mkdir BUMHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUMHMM.buildbin-libdir BUMHMM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BUMHMM_1.4.0.zip && rm BUMHMM_1.4.0.tar.gz BUMHMM_1.4.0.zip
StartedAt: 2018-10-16 20:29:54 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:30:39 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 44.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BUMHMM_1.4.0.tar.gz && rm -rf BUMHMM.buildbin-libdir && mkdir BUMHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUMHMM.buildbin-libdir BUMHMM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BUMHMM_1.4.0.zip && rm BUMHMM_1.4.0.tar.gz BUMHMM_1.4.0.zip
###
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100  783k  100  783k    0     0  13.1M      0 --:--:-- --:--:-- --:--:-- 15.0M

install for i386

* installing *source* package 'BUMHMM' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BUMHMM'
    finding HTML links ... done
    computeProbs                            html  
    finding level-2 HTML links ... done

    computeStretches                        html  
    covFile                                 html  
    docFile                                 html  
    dorFile                                 html  
    findPatternPos                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYHS8wM/R.INSTALL22e0147e199e/BUMHMM/man/findPatternPos.Rd:33: file link 'stri_locate_all_fixed' in package 'stringi' does not exist and so has been treated as a topic
    nuclPerm                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYHS8wM/R.INSTALL22e0147e199e/BUMHMM/man/nuclPerm.Rd:19: file link 'permutations' in package 'gtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYHS8wM/R.INSTALL22e0147e199e/BUMHMM/man/nuclPerm.Rd:40: file link 'permutations' in package 'gtools' does not exist and so has been treated as a topic
    scaleDOR                                html  
    se                                      html  
    selectNuclPos                           html  
    seq                                     html  
    stabiliseVariance                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BUMHMM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BUMHMM' as BUMHMM_1.4.0.zip
* DONE (BUMHMM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'BUMHMM' successfully unpacked and MD5 sums checked
In R CMD INSTALL