Back to Multiple platform build/check report for BioC 3.7
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for aroma.light on tokay2

This page was generated on 2018-10-17 08:32:54 -0400 (Wed, 17 Oct 2018).

Package 64/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
aroma.light 3.10.0
Henrik Bengtsson
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/aroma.light
Branch: RELEASE_3_7
Last Commit: 37873e5
Last Changed Date: 2018-04-30 10:35:05 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: aroma.light
Version: 3.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/aroma.light_3.10.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.10.0.zip && rm aroma.light_3.10.0.tar.gz aroma.light_3.10.0.zip
StartedAt: 2018-10-16 18:38:18 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:39:48 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 89.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/aroma.light_3.10.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.10.0.zip && rm aroma.light_3.10.0.tar.gz aroma.light_3.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  435k  100  435k    0     0  6801k      0 --:--:-- --:--:-- --:--:-- 7646k

install for i386

* installing *source* package 'aroma.light' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'aroma.light'
    finding HTML links ... done
    1._Calibration_and_Normalization        html  
    Non-documented_objects                  html  
    aroma.light-package                     html  
    averageQuantile                         html  
    backtransformAffine                     html  
    backtransformPrincipalCurve             html  
    calibrateMultiscan                      html  
    callNaiveGenotypes                      html  
    distanceBetweenLines                    html  
    findPeaksAndValleys                     html  
    fitIWPCA                                html  
    fitNaiveGenotypes                       html  
    fitPrincipalCurve                       html  
    fitXYCurve                              html  
    iwpca                                   html  
    likelihood.smooth.spline                html  
    medianPolish                            html  
    normalizeAffine                         html  
    normalizeAverage                        html  
    normalizeCurveFit                       html  
    normalizeDifferencesToAverage           html  
    normalizeFragmentLength                 html  
    normalizeQuantileRank                   html  
    normalizeQuantileRank.matrix            html  
    normalizeQuantileSpline                 html  
    normalizeTumorBoost                     html  
    pairedAlleleSpecificCopyNumbers         html  
    plotDensity                             html  
    plotMvsA                                html  
    plotMvsAPairs                           html  
    plotMvsMPairs                           html  
    plotXYCurve                             html  
    print.SmoothSplineLikelihood            html  
    robustSmoothSpline                      html  
    sampleCorrelations                      html  
    sampleTuples                            html  
    wpca                                    html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'aroma.light' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aroma.light' as aroma.light_3.10.0.zip
* DONE (aroma.light)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'aroma.light' successfully unpacked and MD5 sums checked
In R CMD INSTALL