Back to Multiple platform build/check report for BioC 3.7
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for ChIPanalyser on tokay2

This page was generated on 2018-10-17 08:44:29 -0400 (Wed, 17 Oct 2018).

Package 227/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPanalyser 1.2.0
Patrick C.N. Martin
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/ChIPanalyser
Branch: RELEASE_3_7
Last Commit: 773b147
Last Changed Date: 2018-04-30 10:35:47 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ChIPanalyser
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ChIPanalyser_1.2.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.2.0.zip && rm ChIPanalyser_1.2.0.tar.gz ChIPanalyser_1.2.0.zip
StartedAt: 2018-10-16 20:04:48 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:06:24 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 96.4 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ChIPanalyser_1.2.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.2.0.zip && rm ChIPanalyser_1.2.0.tar.gz ChIPanalyser_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  526k  100  526k    0     0  8264k      0 --:--:-- --:--:-- --:--:-- 9241k

install for i386

* installing *source* package 'ChIPanalyser' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChIPanalyser'
    finding HTML links ... done
    AllSitesAboveThreshold                  html  
    finding level-2 HTML links ... done

    BPFrequency                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/BPFrequency.Rd:32: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/BPFrequency.Rd:34: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    BPFrequency_-                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/BPFrequency_-.Rd:41: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/BPFrequency_-.Rd:59: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/BPFrequency_-.Rd:60: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    ChIPanalyser-package                    html  
    DNASequenceLength                       html  
    DNASequenceLength_-                     html  
    GRList-class                            html  
    NoAccess                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/NoAccess.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    PFMFormat                               html  
    PFMFormat_                              html  
    PWMThreshold                            html  
    PWMThreshold_-                          html  
    PWMpseudocount                          html  
    PWMpseudocount_-                        html  
    PositionFrequencyMatrix                 html  
    PositionFrequencyMatrix_-               html  
    PositionWeightMatrix                    html  
    PositionWeightMatrix_-                  html  
    ScalingFactorPWM                        html  
    ScalingFactorPWM_-                      html  
    averageExpPWMScore                      html  
    backgroundSignal                        html  
    backgroundSignal_-                      html  
    boundMolecules                          html  
    boundMolecules_-                        html  
    chipMean                                html  
    chipMean_-                              html  
    chipSd                                  html  
    chipSd_-                                html  
    chipSmooth                              html  
    chipSmooth_-                            html  
    computeChipProfile                      html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeChipProfile.Rd:19: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeChipProfile.Rd:22: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeChipProfile.Rd:92: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeGenomeWidePWMScore               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:23: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeOccupancy                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeOccupancy.Rd:72: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeOccupancy.Rd:74: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeOptimal                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeOptimal.Rd:24: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeOptimal.Rd:40: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeOptimal.Rd:45: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computeOptimal.Rd:85: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computePWMScore                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computePWMScore.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computePWMScore.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computePWMScore.Rd:58: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/computePWMScore.Rd:59: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    data                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/data.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/data.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/data.Rd:33: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    genomicProfileParameters-class          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/genomicProfileParameters-class.Rd:90: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    genomicProfileParameters                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/genomicProfileParameters.Rd:63: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    maxPWMScore                             html  
    maxSignal                               html  
    maxSignal_-                             html  
    minPWMScore                             html  
    naturalLog                              html  
    naturalLog_-                            html  
    noOfSites                               html  
    noOfSites_-                             html  
    occupancyProfileParameters-class        html  
    occupancyProfileParameters              html  
    ploidy                                  html  
    ploidy_-                                html  
    plotOccupancyProfile                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/plotOccupancyProfile.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/plotOccupancyProfile.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/plotOccupancyProfile.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/plotOccupancyProfile.Rd:39: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/plotOccupancyProfile.Rd:54: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    plotOptimalHeatMaps                     html  
    processingChIPseq                       html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/processingChIPseq.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/processingChIPseq.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/processingChIPseq.Rd:51: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    profileAccuracyEstimate                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/profileAccuracyEstimate.Rd:27: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpO0HYTO/R.INSTALL18446e313b43/ChIPanalyser/man/profileAccuracyEstimate.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    removeBackground                        html  
    removeBackground_-                      html  
    searchSites                             html  
    stepSize                                html  
    stepSize_-                              html  
    strandRule                              html  
    strandRule_-                            html  
    thetaThreshold                          html  
    thetaThreshold_-                        html  
    whichstrand                             html  
    whichstrand_-                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.2.0.zip
* DONE (ChIPanalyser)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ChIPanalyser' successfully unpacked and MD5 sums checked
In R CMD INSTALL