BioC experimental data: CHECK report for miRNATarget on malbec1

Package: miRNATarget

Version: 1.15.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.15.0.tar.gz

StartedAt: 2017-08-15 10:56:14 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 10:56:59 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 44.8 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.15.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.004	0.008	0.014
HS_refseq_to_affy_hc_g110	0.004	0.000	0.005
HS_refseq_to_affy_hg_focus	0.016	0.000	0.016
HS_refseq_to_affy_hg_u133_plus_2	0.056	0.000	0.058
HS_refseq_to_affy_hg_u133a	0.036	0.000	0.037
HS_refseq_to_affy_hg_u133a_2	0.036	0.000	0.038
HS_refseq_to_affy_hg_u133b	0.020	0.000	0.018
HS_refseq_to_affy_hg_u95a	0.016	0.008	0.024
HS_refseq_to_affy_hg_u95av2	0.024	0.004	0.027
HS_refseq_to_affy_hg_u95b	0.016	0.000	0.015
HS_refseq_to_affy_hg_u95c	0.012	0.000	0.010
HS_refseq_to_affy_hg_u95d	0.004	0.000	0.007
HS_refseq_to_affy_hg_u95e	0.012	0.000	0.011
HS_refseq_to_affy_huex_1_0_st_v2	1.080	0.020	1.101
HS_refseq_to_affy_hugene_1_0_st_v1	0.052	0.000	0.050
HS_refseq_to_affy_hugenefl	0.016	0.000	0.015
HS_refseq_to_affy_u133_x3p	0.072	0.000	0.072
HS_refseq_to_agilent_cgh_44b	0.008	0.004	0.013
HS_refseq_to_agilent_wholegenome	0.076	0.000	0.073
HS_refseq_to_canonical_transcript_stable_id	0.112	0.000	0.112
HS_refseq_to_ccds	0.040	0.000	0.038
HS_refseq_to_codelink	0.228	0.000	0.227
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.000	0.000	0.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.000	0.000	0.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.004	0.000	0.002
HS_refseq_to_embl	0.556	0.000	0.557
HS_refseq_to_ensembl_exon_id	0.004	0.000	0.002
HS_refseq_to_ensembl_gene_id	0.048	0.004	0.053
HS_refseq_to_ensembl_peptide_id	0.048	0.000	0.046
HS_refseq_to_ensembl_transcript_id	0.052	0.004	0.054
HS_refseq_to_entrezgene	0.040	0.012	0.052
HS_refseq_to_hgnc_id	0.044	0.004	0.049
HS_refseq_to_hgnc_symbol	0.112	0.000	0.109
HS_refseq_to_hgnc_transcript_name	0.044	0.004	0.050
HS_refseq_to_illumina_humanht_12	0.052	0.000	0.051
HS_refseq_to_illumina_humanwg_6_v1	0.048	0.000	0.046
HS_refseq_to_illumina_humanwg_6_v2	0.040	0.000	0.039
HS_refseq_to_illumina_humanwg_6_v3	0.048	0.000	0.046
HS_refseq_to_interpro	0.112	0.004	0.115
HS_refseq_to_ipi	0.164	0.004	0.168
HS_refseq_to_merops	0.004	0.000	0.004
HS_refseq_to_pdb	0.084	0.000	0.084
HS_refseq_to_pfam	0.064	0.000	0.064
HS_refseq_to_phalanx_onearray	0.036	0.000	0.037
HS_refseq_to_protein_id	0.980	0.004	0.985
HS_refseq_to_refseq_dna	0.052	0.004	0.058
HS_refseq_to_refseq_genomic	0.000	0.000	0.002
HS_refseq_to_refseq_peptide	0.088	0.000	0.089
HS_refseq_to_rfam	0.000	0.000	0.002
HS_refseq_to_rfam_gene_name	0.076	0.000	0.073
HS_refseq_to_rfam_transcript_name	0.000	0.000	0.002
HS_refseq_to_smart	0.032	0.000	0.034
HS_refseq_to_tigrfam	0.008	0.000	0.005
HS_refseq_to_ucsc	0.260	0.000	0.262
HS_refseq_to_unigene	0.056	0.000	0.054
HS_refseq_to_uniprot_genename	0.040	0.000	0.037
HS_refseq_to_uniprot_genename_transcript_name	0.000	0.000	0.001
HS_refseq_to_uniprot_sptrembl	0.004	0.000	0.002
HS_refseq_to_uniprot_swissprot	0.000	0.000	0.001
HS_refseq_to_uniprot_swissprot_accession	0.000	0.000	0.002
HS_refseq_to_wikigene_id	0.004	0.000	0.001
HS_refseq_to_wikigene_name	0.044	0.000	0.043
MM_conv_id	0.004	0.000	0.002
MM_refseq_to_affy_mg_u74a	0.012	0.000	0.014
MM_refseq_to_affy_mg_u74av2	0.008	0.004	0.013
MM_refseq_to_affy_mg_u74b	0.012	0.000	0.011
MM_refseq_to_affy_mg_u74bv2	0.012	0.000	0.012
MM_refseq_to_affy_mg_u74c	0.004	0.000	0.004
MM_refseq_to_affy_mg_u74cv2	0.008	0.000	0.006
MM_refseq_to_affy_moe430a	0.028	0.000	0.028
MM_refseq_to_affy_moe430b	0.012	0.000	0.013
MM_refseq_to_affy_moex_1_0_st_v1	0.348	0.000	0.347
MM_refseq_to_affy_mogene_1_0_st_v1	0.036	0.004	0.037
MM_refseq_to_affy_mouse430_2	0.044	0.000	0.043
MM_refseq_to_affy_mouse430a_2	0.032	0.000	0.031
MM_refseq_to_affy_mu11ksuba	0.008	0.000	0.010
MM_refseq_to_affy_mu11ksubb	0.004	0.000	0.008
MM_refseq_to_agilent_wholegenome	0.056	0.000	0.057
MM_refseq_to_canonical_transcript_stable_id	0.056	0.000	0.054
MM_refseq_to_ccds	0.028	0.000	0.028
MM_refseq_to_codelink	0.096	0.000	0.098
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.000	0.000	0.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.004	0.000	0.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.000	0.000	0.001
MM_refseq_to_embl	0.260	0.000	0.262
MM_refseq_to_ensembl_exon_id	0.004	0.000	0.002
MM_refseq_to_ensembl_gene_id	0.032	0.000	0.032
MM_refseq_to_ensembl_peptide_id	0.140	0.000	0.137
MM_refseq_to_ensembl_transcript_id	0.032	0.004	0.036
MM_refseq_to_entrezgene	0.032	0.000	0.032
MM_refseq_to_fantom	0.084	0.000	0.085
MM_refseq_to_illumina_mousewg_6_v1	0.040	0.000	0.042
MM_refseq_to_illumina_mousewg_6_v2	0.048	0.000	0.045
MM_refseq_to_interpro	0.096	0.000	0.095
MM_refseq_to_ipi	0.000	0.000	0.001
MM_refseq_to_merops	0.004	0.000	0.003
MM_refseq_to_mgi_id	0.036	0.000	0.034
MM_refseq_to_mgi_symbol	0.220	0.000	0.221
MM_refseq_to_mgi_transcript_name	0.032	0.000	0.032
MM_refseq_to_pdb	0.008	0.000	0.009
MM_refseq_to_pfam	0.052	0.000	0.051
MM_refseq_to_phalanx_onearray	0.028	0.000	0.027
MM_refseq_to_protein_id	0.224	0.000	0.224
MM_refseq_to_refseq_dna	0.040	0.004	0.043
MM_refseq_to_refseq_peptide	0.06	0.00	0.06
MM_refseq_to_rfam	0.004	0.000	0.002
MM_refseq_to_rfam_gene_name	0.000	0.000	0.001
MM_refseq_to_rfam_transcript_name	0.004	0.000	0.001
MM_refseq_to_smart	0.024	0.000	0.025
MM_refseq_to_tigrfam	0.004	0.000	0.004
MM_refseq_to_ucsc	0.032	0.000	0.031
MM_refseq_to_unigene	0.044	0.000	0.041
MM_refseq_to_uniprot_genename	0.028	0.000	0.030
MM_refseq_to_uniprot_genename_transcript_name	0.000	0.000	0.002
MM_refseq_to_uniprot_sptrembl	0.004	0.000	0.002
MM_refseq_to_uniprot_swissprot	0.000	0.000	0.001
MM_refseq_to_uniprot_swissprot_accession	0.000	0.000	0.001
MM_refseq_to_wikigene_id	0.004	0.000	0.002
MM_refseq_to_wikigene_name	0.032	0.000	0.032
TBL2	0.960	0.156	1.115
TBL2_HS	1.404	0.288	1.696
TBL2_MM	0.752	0.116	0.872
conv_id	0.000	0.000	0.003
id_conv	0.028	0.000	0.030