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BioC experimental data: CHECK report for geneLenDataBase on malbec1

This page was generated on 2017-08-15 15:11:09 -0400 (Tue, 15 Aug 2017).

Package 116/317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.13.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 4157 / Revision: 4227
Last Changed Date: 2017-04-24 16:19:55 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.13.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.13.0.tar.gz
StartedAt: 2017-08-15 10:46:24 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:51:33 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 309.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.13.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 0.476  0.016   5.923
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.1040.0040.108
anoCar1.genscan.LENGTH0.0600.0120.073
anoCar1.xenoRefGene.LENGTH1.5800.0001.583
anoGam1.ensGene.LENGTH0.0960.0080.105
anoGam1.geneid.LENGTH0.0600.0120.073
anoGam1.genscan.LENGTH0.0480.0160.062
apiMel1.genscan.LENGTH0.0360.0200.055
apiMel2.ensGene.LENGTH0.1160.0160.132
apiMel2.geneid.LENGTH0.0760.0000.076
apiMel2.genscan.LENGTH0.0440.0080.052
aplCal1.xenoRefGene.LENGTH0.6120.0000.612
bosTau2.geneSymbol.LENGTH0.0880.0160.106
bosTau2.geneid.LENGTH0.3680.0000.369
bosTau2.genscan.LENGTH0.0960.0160.111
bosTau2.refGene.LENGTH0.0600.0040.065
bosTau2.sgpGene.LENGTH0.1240.0000.121
bosTau3.ensGene.LENGTH0.6080.0200.629
bosTau3.geneSymbol.LENGTH0.0360.0160.052
bosTau3.geneid.LENGTH0.1120.0080.119
bosTau3.genscan.LENGTH0.0720.0040.076
bosTau3.refGene.LENGTH0.0400.0120.049
bosTau3.sgpGene.LENGTH0.1040.0120.118
bosTau4.ensGene.LENGTH0.1320.0120.142
bosTau4.geneSymbol.LENGTH0.0400.0080.049
bosTau4.genscan.LENGTH0.0680.0040.074
bosTau4.nscanGene.LENGTH0.0360.0080.043
bosTau4.refGene.LENGTH0.0320.0160.047
braFlo1.xenoRefGene.LENGTH0.4600.0080.466
caeJap1.xenoRefGene.LENGTH0.3920.0000.393
caePb1.xenoRefGene.LENGTH0.5680.0000.568
caePb2.xenoRefGene.LENGTH0.540.000.54
caeRem2.xenoRefGene.LENGTH0.520.000.52
caeRem3.xenoRefGene.LENGTH0.3920.0000.392
calJac1.genscan.LENGTH0.0880.0200.111
calJac1.nscanGene.LENGTH0.1000.0040.106
calJac1.xenoRefGene.LENGTH0.8440.0080.852
canFam1.ensGene.LENGTH0.1160.0040.119
canFam1.geneSymbol.LENGTH0.0040.0040.007
canFam1.genscan.LENGTH0.0680.0040.070
canFam1.nscanGene.LENGTH0.0640.0040.067
canFam1.refGene.LENGTH0.0080.0000.007
canFam1.xenoRefGene.LENGTH0.7640.0000.763
canFam2.ensGene.LENGTH0.1240.0120.138
canFam2.geneSymbol.LENGTH0.0000.0040.007
canFam2.genscan.LENGTH0.0600.0000.063
canFam2.nscanGene.LENGTH0.0560.0080.067
canFam2.refGene.LENGTH0.0080.0000.006
canFam2.xenoRefGene.LENGTH0.6880.0000.688
cavPor3.ensGene.LENGTH0.1240.0080.130
cavPor3.genscan.LENGTH0.460.000.46
cavPor3.nscanGene.LENGTH0.0600.0120.070
cavPor3.xenoRefGene.LENGTH0.5520.0000.553
cb1.xenoRefGene.LENGTH0.4080.0000.412
cb3.xenoRefGene.LENGTH0.9920.0000.994
ce2.geneSymbol.LENGTH0.0840.0240.110
ce2.geneid.LENGTH0.0560.0000.054
ce2.refGene.LENGTH0.0880.0120.099
ce4.geneSymbol.LENGTH0.0920.0120.104
ce4.refGene.LENGTH0.0720.0200.091
ce4.xenoRefGene.LENGTH0.080.000.08
ce6.ensGene.LENGTH0.1000.0040.102
ce6.geneSymbol.LENGTH0.0720.0240.096
ce6.refGene.LENGTH0.0800.0160.095
ce6.xenoRefGene.LENGTH0.10.00.1
ci1.geneSymbol.LENGTH0.0040.0040.008
ci1.refGene.LENGTH0.0040.0040.006
ci1.xenoRefGene.LENGTH0.1480.0000.151
ci2.ensGene.LENGTH0.0600.0000.061
ci2.geneSymbol.LENGTH0.0080.0000.007
ci2.refGene.LENGTH0.0080.0000.006
ci2.xenoRefGene.LENGTH0.3040.0000.307
danRer3.ensGene.LENGTH0.1280.0240.154
danRer3.geneSymbol.LENGTH0.0680.0200.089
danRer3.refGene.LENGTH0.0760.0200.095
danRer4.ensGene.LENGTH0.1480.0040.152
danRer4.geneSymbol.LENGTH0.0680.0120.080
danRer4.genscan.LENGTH0.060.000.06
danRer4.nscanGene.LENGTH0.1680.0040.169
danRer4.refGene.LENGTH0.0520.0280.079
danRer5.ensGene.LENGTH0.1240.0000.124
danRer5.geneSymbol.LENGTH0.0560.0160.075
danRer5.refGene.LENGTH0.0560.0160.072
danRer5.vegaGene.LENGTH0.0520.0160.071
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1120.0240.139
danRer6.geneSymbol.LENGTH0.0480.0240.073
danRer6.refGene.LENGTH0.0640.0080.069
danRer6.xenoRefGene.LENGTH0.5640.0040.569
dm1.geneSymbol.LENGTH0.0960.0040.100
dm1.genscan.LENGTH0.0320.0080.037
dm1.refGene.LENGTH0.0800.0080.091
dm2.geneSymbol.LENGTH0.0480.0480.100
dm2.geneid.LENGTH0.0400.0200.057
dm2.genscan.LENGTH0.0360.0000.036
dm2.nscanGene.LENGTH0.0520.0000.051
dm2.refGene.LENGTH0.1440.0120.156
dm3.geneSymbol.LENGTH0.0680.0040.072
dm3.nscanPasaGene.LENGTH0.0560.0240.082
dm3.refGene.LENGTH0.0680.0000.068
dp2.genscan.LENGTH0.0440.0040.046
dp2.xenoRefGene.LENGTH0.2520.0000.253
dp3.geneid.LENGTH0.0360.0240.060
dp3.genscan.LENGTH0.0280.0120.038
dp3.xenoRefGene.LENGTH0.1480.0080.157
droAna1.geneid.LENGTH0.0720.0040.076
droAna1.genscan.LENGTH0.0200.0000.023
droAna1.xenoRefGene.LENGTH0.4200.0040.425
droAna2.genscan.LENGTH0.0520.0000.051
droAna2.xenoRefGene.LENGTH0.3400.0000.341
droEre1.genscan.LENGTH0.0320.0120.044
droEre1.xenoRefGene.LENGTH0.3600.0000.362
droGri1.genscan.LENGTH0.0520.0040.055
droGri1.xenoRefGene.LENGTH0.3240.0080.330
droMoj1.geneid.LENGTH0.6400.0120.652
droMoj1.genscan.LENGTH0.0680.0000.067
droMoj1.xenoRefGene.LENGTH0.2280.0080.235
droMoj2.genscan.LENGTH0.0360.0120.048
droMoj2.xenoRefGene.LENGTH0.2640.0080.271
droPer1.genscan.LENGTH0.0360.0200.056
droPer1.xenoRefGene.LENGTH0.2680.0080.273
droSec1.genscan.LENGTH0.0400.0040.044
droSec1.xenoRefGene.LENGTH0.2720.0000.273
droSim1.geneid.LENGTH0.0320.0240.057
droSim1.genscan.LENGTH0.0320.0040.036
droSim1.xenoRefGene.LENGTH0.2240.0000.222
droVir1.geneid.LENGTH0.1000.0040.104
droVir1.genscan.LENGTH0.1200.0080.126
droVir1.xenoRefGene.LENGTH0.2960.0000.296
droVir2.genscan.LENGTH0.0360.0120.047
droVir2.xenoRefGene.LENGTH0.2840.0000.286
droYak1.geneid.LENGTH0.0400.0240.066
droYak1.genscan.LENGTH0.0360.0080.042
droYak1.xenoRefGene.LENGTH0.2400.0000.239
droYak2.genscan.LENGTH0.0320.0080.042
droYak2.xenoRefGene.LENGTH0.3200.0000.317
equCab1.geneSymbol.LENGTH0.0040.0000.006
equCab1.geneid.LENGTH0.0880.0080.094
equCab1.nscanGene.LENGTH0.0320.0280.060
equCab1.refGene.LENGTH0.0040.0000.006
equCab1.sgpGene.LENGTH0.0680.0080.074
equCab2.ensGene.LENGTH0.1720.0080.179
equCab2.geneSymbol.LENGTH0.0040.0040.009
equCab2.nscanGene.LENGTH0.0760.0040.078
equCab2.refGene.LENGTH0.0080.0000.010
equCab2.xenoRefGene.LENGTH0.5920.0040.600
felCat3.ensGene.LENGTH0.1040.0000.106
felCat3.geneSymbol.LENGTH0.0040.0000.004
felCat3.geneid.LENGTH0.7880.0080.798
felCat3.genscan.LENGTH0.1240.0120.134
felCat3.nscanGene.LENGTH0.0880.0120.101
felCat3.refGene.LENGTH0.0040.0000.005
felCat3.sgpGene.LENGTH0.1360.0000.136
felCat3.xenoRefGene.LENGTH1.2040.0081.211
fr1.ensGene.LENGTH0.0840.0080.092
fr1.genscan.LENGTH0.0560.0040.060
fr2.ensGene.LENGTH0.2400.0120.254
galGal2.ensGene.LENGTH0.0560.0000.058
galGal2.geneSymbol.LENGTH0.0160.0080.024
galGal2.geneid.LENGTH0.0400.0160.058
galGal2.genscan.LENGTH0.0680.0120.077
galGal2.refGene.LENGTH0.0160.0080.023
galGal2.sgpGene.LENGTH0.0560.0160.073
galGal3.ensGene.LENGTH0.0760.0080.083
galGal3.geneSymbol.LENGTH0.0200.0040.022
galGal3.genscan.LENGTH0.0480.0200.070
galGal3.nscanGene.LENGTH0.0680.0000.068
galGal3.refGene.LENGTH0.0160.0040.020
galGal3.xenoRefGene.LENGTH0.5800.0000.579
gasAcu1.ensGene.LENGTH0.2120.0040.216
gasAcu1.nscanGene.LENGTH0.1040.0160.122
hg16.acembly.LENGTH1.1080.0001.106
hg16.ensGene.LENGTH0.0880.0000.088
hg16.exoniphy.LENGTH0.2200.0040.222
hg16.geneSymbol.LENGTH0.1120.0040.115
hg16.geneid.LENGTH0.0520.0200.072
hg16.genscan.LENGTH0.0640.0000.066
hg16.knownGene.LENGTH0.1240.0200.146
hg16.refGene.LENGTH0.1000.0000.098
hg16.sgpGene.LENGTH0.0560.0000.057
hg17.acembly.LENGTH0.4880.0080.498
hg17.acescan.LENGTH0.0160.0000.014
hg17.ccdsGene.LENGTH0.0320.0000.033
hg17.ensGene.LENGTH0.1320.0200.153
hg17.exoniphy.LENGTH0.3960.0000.398
hg17.geneSymbol.LENGTH0.1120.0080.118
hg17.geneid.LENGTH0.0800.0040.084
hg17.genscan.LENGTH0.0600.0040.064
hg17.knownGene.LENGTH0.1040.0120.117
hg17.refGene.LENGTH0.0920.0040.097
hg17.sgpGene.LENGTH0.0720.0080.084
hg17.vegaGene.LENGTH0.1800.0160.197
hg17.vegaPseudoGene.LENGTH0.0160.0080.023
hg17.xenoRefGene.LENGTH0.2520.0040.254
hg18.acembly.LENGTH0.5080.0000.509
hg18.acescan.LENGTH0.0120.0000.013
hg18.ccdsGene.LENGTH0.0280.0160.047
hg18.ensGene.LENGTH0.2080.0040.213
hg18.exoniphy.LENGTH0.4240.0040.426
hg18.geneSymbol.LENGTH0.1040.0040.110
hg18.geneid.LENGTH0.2160.0120.231
hg18.genscan.LENGTH0.0680.0000.070
hg18.knownGene.LENGTH0.1640.0000.163
hg18.knownGeneOld3.LENGTH0.0760.0120.086
hg18.refGene.LENGTH0.1040.0080.113
hg18.sgpGene.LENGTH0.0800.0120.091
hg18.sibGene.LENGTH0.3520.0040.355
hg18.xenoRefGene.LENGTH0.6960.0160.712
hg19.ccdsGene.LENGTH0.0480.0120.059
hg19.ensGene.LENGTH1.4360.0321.469
hg19.exoniphy.LENGTH0.3920.0040.393
hg19.geneSymbol.LENGTH0.1120.0000.112
hg19.knownGene.LENGTH0.1600.0240.185
hg19.nscanGene.LENGTH0.140.000.14
hg19.refGene.LENGTH0.1000.0120.112
hg19.xenoRefGene.LENGTH0.4280.0000.430
loxAfr3.xenoRefGene.LENGTH0.8760.0000.877
mm7.ensGene.LENGTH0.120.000.12
mm7.geneSymbol.LENGTH0.0800.0040.085
mm7.geneid.LENGTH0.2200.0040.227
mm7.genscan.LENGTH0.0600.0040.068
mm7.knownGene.LENGTH0.0920.0000.093
mm7.refGene.LENGTH0.0800.0000.081
mm7.sgpGene.LENGTH0.0840.0040.089
mm7.xenoRefGene.LENGTH0.3560.0000.359
mm8.ccdsGene.LENGTH0.0200.0080.031
mm8.ensGene.LENGTH0.0800.0080.088
mm8.geneSymbol.LENGTH0.1040.0000.105
mm8.geneid.LENGTH0.0880.0040.092
mm8.genscan.LENGTH0.060.000.06
mm8.knownGene.LENGTH0.1000.0000.101
mm8.nscanGene.LENGTH0.0640.0000.060
mm8.refGene.LENGTH0.0920.0000.093
mm8.sgpGene.LENGTH0.0720.0120.084
mm8.sibGene.LENGTH0.4880.0000.487
mm8.xenoRefGene.LENGTH0.3720.0080.381
mm9.acembly.LENGTH0.3160.0000.314
mm9.ccdsGene.LENGTH0.0280.0120.040
mm9.ensGene.LENGTH0.1520.0160.166
mm9.exoniphy.LENGTH0.4120.0040.418
mm9.geneSymbol.LENGTH0.2360.0000.237
mm9.geneid.LENGTH0.0840.0160.100
mm9.genscan.LENGTH0.0760.0000.074
mm9.knownGene.LENGTH0.1080.0240.133
mm9.nscanGene.LENGTH0.060.000.06
mm9.refGene.LENGTH0.0800.0000.081
mm9.sgpGene.LENGTH0.0840.0120.097
mm9.xenoRefGene.LENGTH0.3760.0080.386
monDom1.genscan.LENGTH0.3200.0000.317
monDom4.ensGene.LENGTH0.0760.0040.081
monDom4.geneSymbol.LENGTH0.0040.0000.004
monDom4.genscan.LENGTH0.0640.0160.081
monDom4.nscanGene.LENGTH0.0640.0200.082
monDom4.refGene.LENGTH0.0040.0000.004
monDom4.xenoRefGene.LENGTH0.4200.0040.423
monDom5.ensGene.LENGTH0.1160.0000.115
monDom5.geneSymbol.LENGTH0.0080.0000.008
monDom5.genscan.LENGTH0.0560.0000.055
monDom5.nscanGene.LENGTH0.7680.0000.767
monDom5.refGene.LENGTH0.0040.0000.004
monDom5.xenoRefGene.LENGTH0.6680.0040.670
ornAna1.ensGene.LENGTH0.1040.0200.123
ornAna1.geneSymbol.LENGTH0.0040.0000.004
ornAna1.refGene.LENGTH0.0040.0000.003
ornAna1.xenoRefGene.LENGTH0.5960.0000.596
oryLat2.ensGene.LENGTH0.0880.0040.092
oryLat2.geneSymbol.LENGTH0.0040.0000.005
oryLat2.refGene.LENGTH0.0080.0000.004
oryLat2.xenoRefGene.LENGTH0.6040.0000.605
panTro1.ensGene.LENGTH0.0960.0040.102
panTro1.geneid.LENGTH0.0600.0200.077
panTro1.genscan.LENGTH0.0560.0040.059
panTro1.xenoRefGene.LENGTH0.1200.0120.134
panTro2.ensGene.LENGTH0.1120.0000.114
panTro2.geneSymbol.LENGTH0.1000.0120.109
panTro2.genscan.LENGTH0.0560.0000.055
panTro2.nscanGene.LENGTH0.1760.0000.176
panTro2.refGene.LENGTH0.0880.0080.098
panTro2.xenoRefGene.LENGTH0.4920.0000.490
petMar1.xenoRefGene.LENGTH0.3040.0080.311
ponAbe2.ensGene.LENGTH0.0960.0080.104
ponAbe2.geneSymbol.LENGTH0.0120.0040.018
ponAbe2.genscan.LENGTH0.0600.0000.062
ponAbe2.nscanGene.LENGTH0.0640.0000.062
ponAbe2.refGene.LENGTH0.0080.0080.018
ponAbe2.xenoRefGene.LENGTH0.7560.0000.754
priPac1.xenoRefGene.LENGTH0.4320.0000.433
rheMac2.ensGene.LENGTH0.2160.0000.215
rheMac2.geneSymbol.LENGTH0.0080.0000.008
rheMac2.geneid.LENGTH0.0760.0040.080
rheMac2.nscanGene.LENGTH0.0600.0000.063
rheMac2.refGene.LENGTH0.0040.0040.008
rheMac2.sgpGene.LENGTH0.0760.0040.080
rheMac2.xenoRefGene.LENGTH0.5520.0000.554
rn3.ensGene.LENGTH0.1320.0080.140
rn3.geneSymbol.LENGTH0.0680.0160.082
rn3.geneid.LENGTH0.0480.0000.050
rn3.genscan.LENGTH0.0640.0040.068
rn3.knownGene.LENGTH0.0480.0080.054
rn3.nscanGene.LENGTH0.0760.0000.077
rn3.refGene.LENGTH0.0560.0200.074
rn3.sgpGene.LENGTH0.060.000.06
rn3.xenoRefGene.LENGTH0.8520.0000.852
rn4.ensGene.LENGTH0.1760.0040.183
rn4.geneSymbol.LENGTH0.0640.0160.078
rn4.geneid.LENGTH0.0960.0080.105
rn4.genscan.LENGTH0.0640.0040.066
rn4.knownGene.LENGTH0.0360.0040.040
rn4.nscanGene.LENGTH0.0640.0240.085
rn4.refGene.LENGTH0.0520.0200.071
rn4.sgpGene.LENGTH0.0720.0200.094
rn4.xenoRefGene.LENGTH0.3920.0000.393
sacCer1.ensGene.LENGTH0.0280.0000.028
sacCer2.ensGene.LENGTH0.0120.0160.028
strPur1.geneSymbol.LENGTH0.0000.0040.006
strPur1.genscan.LENGTH0.6800.0000.677
strPur1.refGene.LENGTH0.0000.0040.005
strPur1.xenoRefGene.LENGTH0.6120.0000.612
strPur2.geneSymbol.LENGTH0.0040.0000.005
strPur2.genscan.LENGTH0.0920.0040.097
strPur2.refGene.LENGTH0.0080.0000.004
strPur2.xenoRefGene.LENGTH0.7360.0000.736
supportedGeneIDs0.4760.0165.923
supportedGenomes0.1280.0200.620
taeGut1.ensGene.LENGTH0.0680.0000.067
taeGut1.geneSymbol.LENGTH0.0040.0000.003
taeGut1.genscan.LENGTH0.0480.0080.053
taeGut1.nscanGene.LENGTH0.0320.0080.041
taeGut1.refGene.LENGTH0.0040.0000.003
taeGut1.xenoRefGene.LENGTH0.5440.0000.543
tetNig1.ensGene.LENGTH0.2000.0040.203
tetNig1.geneid.LENGTH0.0720.0040.075
tetNig1.genscan.LENGTH0.0640.0120.075
tetNig1.nscanGene.LENGTH0.0640.0120.077
tetNig2.ensGene.LENGTH0.0800.0040.085
unfactor0.0040.0000.005
xenTro1.genscan.LENGTH0.0800.0000.082
xenTro2.ensGene.LENGTH0.1040.0120.117
xenTro2.geneSymbol.LENGTH0.0440.0080.050
xenTro2.genscan.LENGTH0.0880.0040.092
xenTro2.refGene.LENGTH0.0440.0040.046