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BioC experimental data: CHECK report for QDNAseq.mm10 on malbec1

This page was generated on 2017-08-15 15:11:39 -0400 (Tue, 15 Aug 2017).

Package 241/317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QDNAseq.mm10 1.7.0
Daoud Sie
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/QDNAseq.mm10
Last Changed Rev: 4157 / Revision: 4227
Last Changed Date: 2017-04-24 16:19:55 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: QDNAseq.mm10
Version: 1.7.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings QDNAseq.mm10_1.7.0.tar.gz
StartedAt: 2017-08-15 11:02:59 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 11:05:18 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 138.5 seconds
RetCode: 0
Status:  OK 
CheckDir: QDNAseq.mm10.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings QDNAseq.mm10_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/QDNAseq.mm10.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QDNAseq.mm10/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘QDNAseq.mm10’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QDNAseq.mm10’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 31.3Mb
  sub-directories of 1Mb or more:
    data  31.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
mm10.1kbp.SR50 17.48  0.888  18.381
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/QDNAseq.mm10.Rcheck/00check.log’
for details.


QDNAseq.mm10.Rcheck/00install.out:

* installing *source* package ‘QDNAseq.mm10’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (QDNAseq.mm10)

QDNAseq.mm10.Rcheck/QDNAseq.mm10-Ex.timings:

nameusersystemelapsed
QDNAseq.mm10-package0.9480.0200.971
mm10.1000kbp.SR500.0600.0000.062
mm10.100kbp.SR500.1560.0200.175
mm10.10kbp.SR502.4640.0962.558
mm10.15kbp.SR501.0880.0521.142
mm10.1kbp.SR5017.480 0.88818.381
mm10.30kbp.SR500.4360.0400.476
mm10.500kbp.SR500.0480.0040.050
mm10.50kbp.SR500.2600.0320.291
mm10.5kbp.SR503.8320.1323.969