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INSTALL report for charm on tokay1

This page was generated on 2018-04-12 13:20:04 -0400 (Thu, 12 Apr 2018).

Package 209/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
charm 2.24.0
Peter Murakami
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/charm
Branch: RELEASE_3_6
Last Commit: 5700d84
Last Changed Date: 2017-10-30 12:39:28 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: charm
Version: 2.24.0
Command: rm -rf charm.buildbin-libdir && mkdir charm.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=charm.buildbin-libdir --merge-multiarch charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL charm_2.24.0.zip && rm charm_2.24.0.tar.gz charm_2.24.0.zip
StartedAt: 2018-04-11 18:50:14 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:51:16 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf charm.buildbin-libdir && mkdir charm.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=charm.buildbin-libdir --merge-multiarch charm_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL charm_2.24.0.zip  && rm charm_2.24.0.tar.gz charm_2.24.0.zip
###
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install for i386

* installing *source* package 'charm' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'charm'
    finding HTML links ... done
    bgAdjust                                html  
    clusterMaker                            html  
    cmdsplot                                html  
    controlQC                               html  
    countGC                                 html  
    cpgdensity                              html  
    dmrFdr                                  html  
    dmrFind                                 html  
    dmrFinder                               html  
    dmrPlot                                 html  
    getControlIndex                         html  
    maxDensity                              html  
    methPercent                             html  
    methp                                   html  
    normalizeBetweenSamples                 html  
    normalizeWithinSamples                  html  
    plotDMRs                                html  
    plotDensity                             html  
    plotRegions                             html  
    pmQuality                               html  
    qcReport                                html  
    qval                                    html  
    readCharm                               html  
    regionMatch                             html  
    regionPlot                              html  
    spatialAdjust                           html  
    validatePd                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'charm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'charm' as charm_2.24.0.zip
* DONE (charm)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'charm' successfully unpacked and MD5 sums checked
In R CMD INSTALL