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INSTALL report for bumphunter on tokay1

This page was generated on 2018-04-12 13:22:20 -0400 (Thu, 12 Apr 2018).

Package 168/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bumphunter 1.20.0
Rafael A. Irizarry
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/bumphunter
Branch: RELEASE_3_6
Last Commit: c9d8e7a
Last Changed Date: 2017-10-30 12:39:56 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bumphunter
Version: 1.20.0
Command: rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/bumphunter_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=bumphunter.buildbin-libdir --merge-multiarch bumphunter_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL bumphunter_1.20.0.zip && rm bumphunter_1.20.0.tar.gz bumphunter_1.20.0.zip
StartedAt: 2018-04-11 18:49:15 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:50:02 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 47.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/bumphunter_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=bumphunter.buildbin-libdir --merge-multiarch bumphunter_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL bumphunter_1.20.0.zip  && rm bumphunter_1.20.0.tar.gz bumphunter_1.20.0.zip
###
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100 2273k  100 2273k    0     0  20.7M      0 --:--:-- --:--:-- --:--:-- 21.5M

install for i386

* installing *source* package 'bumphunter' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'bumphunter'
    finding HTML links ... done
    TT                                      html  
    annotateNearest                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp63HJGN/R.INSTALLa58208b6ce9/bumphunter/man/annotateNearest.Rd:31: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp63HJGN/R.INSTALLa58208b6ce9/bumphunter/man/annotateNearest.Rd:34: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp63HJGN/R.INSTALLa58208b6ce9/bumphunter/man/annotateNearest.Rd:59: missing file link 'nearest'
    annotateTranscripts                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp63HJGN/R.INSTALLa58208b6ce9/bumphunter/man/annotateTranscripts.Rd:39: missing file link 'mapIds'
    bumphunter                              html  
    clusterMaker                            html  
    dummyData                               html  
    getSegments                             html  
    locfitByCluster                         html  
    loessByCluster                          html  
    matchGenes                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp63HJGN/R.INSTALLa58208b6ce9/bumphunter/man/matchGenes.Rd:41: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp63HJGN/R.INSTALLa58208b6ce9/bumphunter/man/matchGenes.Rd:55: missing file link 'nearest'
    regionFinder                            html  
    runmedByCluster                         html  
    smoother                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'bumphunter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bumphunter' as bumphunter_1.20.0.zip
* DONE (bumphunter)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'bumphunter' successfully unpacked and MD5 sums checked
In R CMD INSTALL