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INSTALL report for Chicago on tokay1

This page was generated on 2018-04-12 13:27:10 -0400 (Thu, 12 Apr 2018).

Package 212/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Chicago 1.6.0
Mikhail Spivakov
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/Chicago
Branch: RELEASE_3_6
Last Commit: 1fb7051
Last Changed Date: 2017-10-30 12:41:09 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Chicago
Version: 1.6.0
Command: rm -rf Chicago.buildbin-libdir && mkdir Chicago.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Chicago_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Chicago.buildbin-libdir --merge-multiarch Chicago_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Chicago_1.6.0.zip && rm Chicago_1.6.0.tar.gz Chicago_1.6.0.zip
StartedAt: 2018-04-11 18:24:50 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:26:53 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 123.5 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf Chicago.buildbin-libdir && mkdir Chicago.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Chicago_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Chicago.buildbin-libdir --merge-multiarch Chicago_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Chicago_1.6.0.zip  && rm Chicago_1.6.0.tar.gz Chicago_1.6.0.zip
###
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100  429k  100  429k    0     0  15.7M      0 --:--:-- --:--:-- --:--:-- 18.2M

install for i386

* installing *source* package 'Chicago' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Chicago'
    finding HTML links ... done
    Chicago-package                         html  
    cdUnitTest                              html  
    chicagoData                             html  
    chicagoPipeline                         html  
    copyCD                                  html  
    defaultSettings                         html  
    estimateBrownianComponent               html  
    estimateDistFun                         html  
    estimateTechnicalNoise                  html  
    exportResults                           html  
    getPvals                                html  
    getScores                               html  
    getSkOnly                               html  
    mergeSamples                            html  
    modifySettings                          html  
    normaliseBaits                          html  
    normaliseOtherEnds                      html  
    overlapFragWithFeatures                 html  
    finding level-2 HTML links ... done

    peakEnrichment4Features                 html  
    plotBaits                               html  
    plotDistFun                             html  
    readAndMerge                            html  
    readSample                              html  
    setExperiment                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Chicago' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Chicago' as Chicago_1.6.0.zip
* DONE (Chicago)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'Chicago' successfully unpacked and MD5 sums checked
In R CMD INSTALL