H. Pagès
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Biostrings |
| Branch: RELEASE_3_6 |
| Last Commit: 3bf6978 |
| Last Changed Date: 2017-10-30 12:39:00 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:17:26 -0400 (Thu, 12 Apr 2018).
| Package 142/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Biostrings 2.46.0 H. Pagès
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: Biostrings |
| Version: 2.46.0 |
| Command: cd Biostrings.buildbin-libdir/Biostrings && zip -r ../../Biostrings_2.46.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:26:47 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:27:33 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 46.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Biostrings_2.46.0.zip |
| PackageFileSize: 26.25 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd Biostrings.buildbin-libdir/Biostrings && zip -r ../../Biostrings_2.46.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: data/ (372 bytes security) (stored 0%) adding: data/BLOSUM100.rda (332 bytes security) (stored 0%) adding: data/BLOSUM45.rda (332 bytes security) (stored 0%) adding: data/BLOSUM50.rda (332 bytes security) (stored 0%) adding: data/BLOSUM62.rda (332 bytes security) (stored 0%) adding: data/BLOSUM80.rda (332 bytes security) (stored 0%) adding: data/HNF4alpha.rda (332 bytes security) (stored 0%) adding: data/PAM120.rda (332 bytes security) (stored 0%) adding: data/PAM250.rda (332 bytes security) (stored 0%) adding: data/PAM30.rda (332 bytes security) (stored 0%) adding: data/PAM40.rda (332 bytes security) (stored 0%) adding: data/PAM70.rda (332 bytes security) (stored 0%) adding: data/phiX174Phage.rda (332 bytes security) (deflated 1%) adding: data/srPhiX174.rda (332 bytes security) (deflated 4%) adding: data/yeastSEQCHR1.rda (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 51%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/Biostrings2Classes.pdf (332 bytes security) (deflated 6%) adding: doc/Biostrings2Classes.R (332 bytes security) (deflated 84%) adding: doc/Biostrings2Classes.Rnw (332 bytes security) (deflated 63%) adding: doc/BiostringsQuickOverview.pdf (332 bytes security) (deflated 6%) adding: doc/BiostringsQuickOverview.Rnw (332 bytes security) (deflated 73%) adding: doc/index.html (332 bytes security) (deflated 78%) adding: doc/matchprobes.pdf (332 bytes security) (deflated 8%) adding: doc/matchprobes.R (332 bytes security) (deflated 70%) adding: doc/matchprobes.Rnw (332 bytes security) (deflated 62%) adding: doc/MultipleAlignments.pdf (332 bytes security) (deflated 10%) adding: doc/MultipleAlignments.R (332 bytes security) (deflated 79%) adding: doc/MultipleAlignments.Rnw (332 bytes security) (deflated 63%) adding: doc/PairwiseAlignments.pdf (332 bytes security) (deflated 15%) adding: doc/PairwiseAlignments.R (332 bytes security) (deflated 84%) adding: doc/PairwiseAlignments.Rnw (332 bytes security) (deflated 76%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/dm3_upstream2000.fa.gz (332 bytes security) (deflated 3%) adding: extdata/fastaEx.fa (332 bytes security) (deflated 46%) adding: extdata/hg18chr8_gap.txt (332 bytes security) (deflated 55%) adding: extdata/hg18chrY_gap.txt (332 bytes security) (deflated 61%) adding: extdata/msx2_mRNA.aln (332 bytes security) (deflated 87%) adding: extdata/Phylip.txt (332 bytes security) (deflated 68%) adding: extdata/README (332 bytes security) (deflated 35%) adding: extdata/Sc.fa (332 bytes security) (deflated 64%) adding: extdata/someORF.fa (332 bytes security) (deflated 70%) adding: extdata/someORF.fa.gz (332 bytes security) (deflated 1%) adding: extdata/Sp.fa (332 bytes security) (deflated 62%) adding: extdata/s_1_sequence.txt (332 bytes security) (deflated 72%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 88%) adding: help/Biostrings.rdb (332 bytes security) (deflated 1%) adding: help/Biostrings.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 92%) adding: html/AAString-class.html (332 bytes security) (deflated 61%) adding: html/align-utils.html (332 bytes security) (deflated 65%) adding: html/AlignedXStringSet-class.html (332 bytes security) (deflated 66%) adding: html/AMINO_ACID_CODE.html (332 bytes security) (deflated 47%) adding: html/Biostrings-internals.html (332 bytes security) (deflated 42%) adding: html/chartr.html (332 bytes security) (deflated 66%) adding: html/detail.html (332 bytes security) (deflated 54%) adding: html/dinucleotideFrequencyTest.html (332 bytes security) (deflated 59%) adding: html/DNAString-class.html (332 bytes security) (deflated 61%) adding: html/findPalindromes.html (332 bytes security) (deflated 69%) adding: html/GENETIC_CODE.html (332 bytes security) (deflated 68%) adding: html/getSeq.html (332 bytes security) (deflated 58%) adding: html/gregexpr2.html (332 bytes security) (deflated 55%) adding: html/HNF4alpha.html (332 bytes security) (deflated 46%) adding: html/InDel-class.html (332 bytes security) (deflated 53%) adding: html/injectHardMask.html (332 bytes security) (deflated 63%) adding: html/IUPAC_CODE_MAP.html (332 bytes security) (deflated 56%) adding: html/letter.html (332 bytes security) (deflated 60%) adding: html/letterFrequency.html (332 bytes security) (deflated 72%) adding: html/longestConsecutive.html (332 bytes security) (deflated 53%) adding: html/lowlevel-matching.html (332 bytes security) (deflated 74%) adding: html/MaskedXString-class.html (332 bytes security) (deflated 70%) adding: html/maskMotif.html (332 bytes security) (deflated 68%) adding: html/match-utils.html (332 bytes security) (deflated 69%) adding: html/matchLRPatterns.html (332 bytes security) (deflated 68%) adding: html/matchPattern.html (332 bytes security) (deflated 69%) adding: html/matchPDict-exact.html (332 bytes security) (deflated 72%) adding: html/matchPDict-inexact.html (332 bytes security) (deflated 67%) adding: html/matchProbePair.html (332 bytes security) (deflated 65%) adding: html/matchprobes.html (332 bytes security) (deflated 59%) adding: html/matchPWM.html (332 bytes security) (deflated 65%) adding: html/MIndex-class.html (332 bytes security) (deflated 67%) adding: html/misc.html (332 bytes security) (deflated 53%) adding: html/MultipleAlignment-class.html (332 bytes security) (deflated 72%) adding: html/needwunsQS.html (332 bytes security) (deflated 56%) adding: html/nucleotideFrequency.html (332 bytes security) (deflated 70%) adding: html/padAndClip.html (332 bytes security) (deflated 67%) adding: html/pairwiseAlignment.html (332 bytes security) (deflated 69%) adding: html/PairwiseAlignments-class.html (332 bytes security) (deflated 74%) adding: html/PairwiseAlignments-io.html (332 bytes security) (deflated 67%) adding: html/PDict-class.html (332 bytes security) (deflated 69%) adding: html/phiX174Phage.html (332 bytes security) (deflated 56%) adding: html/pid.html (332 bytes security) (deflated 59%) adding: html/pmatchPattern.html (332 bytes security) (deflated 60%) adding: html/QualityScaledXStringSet-class.html (332 bytes security) (deflated 68%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/replaceAt.html (332 bytes security) (deflated 72%) adding: html/replaceLetterAt.html (332 bytes security) (deflated 65%) adding: html/reverseComplement.html (332 bytes security) (deflated 66%) adding: html/RNAString-class.html (332 bytes security) (deflated 61%) adding: html/stringDist.html (332 bytes security) (deflated 69%) adding: html/substitution_matrices.html (332 bytes security) (deflated 65%) adding: html/toComplex.html (332 bytes security) (deflated 54%) adding: html/translate.html (332 bytes security) (deflated 69%) adding: html/trimLRPatterns.html (332 bytes security) (deflated 71%) adding: html/xscat.html (332 bytes security) (deflated 60%) adding: html/XString-class.html (332 bytes security) (deflated 66%) adding: html/XStringPartialMatches-class.html (332 bytes security) (deflated 55%) adding: html/XStringQuality-class.html (332 bytes security) (deflated 63%) adding: html/XStringSet-class.html (332 bytes security) (deflated 71%) adding: html/XStringSet-comparison.html (332 bytes security) (deflated 71%) adding: html/XStringSet-io.html (332 bytes security) (deflated 71%) adding: html/XStringSetList-class.html (332 bytes security) (deflated 65%) adding: html/XStringViews-class.html (332 bytes security) (deflated 64%) adding: html/yeastSEQCHR1.html (332 bytes security) (deflated 52%) adding: include/ (372 bytes security) (stored 0%) adding: include/Biostrings_defines.h (332 bytes security) (deflated 69%) adding: include/Biostrings_interface.h (332 bytes security) (deflated 65%) adding: include/_Biostrings_stubs.c (332 bytes security) (deflated 77%) adding: INDEX (332 bytes security) (deflated 68%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/Biostrings.dll (332 bytes security) (deflated 58%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/Biostrings.dll (332 bytes security) (deflated 57%) adding: MD5 (332 bytes security) (deflated 50%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (deflated 1%) adding: Meta/links.rds (332 bytes security) (deflated 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 75%) adding: NEWS (332 bytes security) (deflated 65%) adding: R/ (372 bytes security) (stored 0%) adding: R/Biostrings (332 bytes security) (deflated 41%) adding: R/Biostrings.rdb (332 bytes security) (deflated 33%) adding: R/Biostrings.rdx (332 bytes security) (deflated 5%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_findPalindromes.R (332 bytes security) (deflated 85%) adding: unitTests/test_matchDNAPattern.R.FIXME (332 bytes security) (deflated 78%) adding: unitTests/test_matchPDict.R (332 bytes security) (deflated 76%) adding: unitTests/test_MultipleAlignment.R (332 bytes security) (deflated 88%) adding: unitTests/test_pairwiseAlignment.R (332 bytes security) (deflated 88%) adding: unitTests/test_twoWayAlphabetFrequency.R (332 bytes security) (deflated 78%) adding: unitTests/test_XString.R (332 bytes security) (deflated 68%) adding: unitTests/test_XStringSet.R (332 bytes security) (deflated 74%) adding: unitTests/test_XStringSetList.R (332 bytes security) (deflated 73%)