| Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:22:17 -0400 (Thu, 12 Apr 2018).
| Package 127/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocParallel 1.12.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BiocParallel |
| Version: 1.12.0 |
| Command: rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/BiocParallel_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir --merge-multiarch BiocParallel_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL BiocParallel_1.12.0.zip && rm BiocParallel_1.12.0.tar.gz BiocParallel_1.12.0.zip |
| StartedAt: 2018-04-11 18:18:31 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:22:28 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 236.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/BiocParallel_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir --merge-multiarch BiocParallel_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL BiocParallel_1.12.0.zip && rm BiocParallel_1.12.0.tar.gz BiocParallel_1.12.0.zip
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install for i386
* installing *source* package 'BiocParallel' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c ipcmutex.cpp -o ipcmutex.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'BiocParallel'
finding HTML links ... done
BatchJobsParam-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/BatchJobsParam-class.Rd:93: missing file link 'ClusterFunctions'
BiocParallel-package html
BiocParallelParam-class html
DoparParam-class html
MulticoreParam-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/MulticoreParam-class.Rd:233: missing file link 'makeCluster'
SerialParam-class html
SnowParam-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/SnowParam-class.Rd:272: missing file link 'makeCluster'
bpaggregate html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/bpaggregate.Rd:47: missing file link 'simplify2array'
bpiterate html
bplapply html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/bplapply.Rd:64: missing file link 'mclapply'
bploop html
bpmapply html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/bpmapply.Rd:46: missing file link 'simplify2array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpy8xjaE/R.INSTALLff43e0e694f/BiocParallel/man/bpmapply.Rd:73: missing file link 'mclapply'
bpok html
bpschedule html
bptry html
bpvalidate html
bpvec html
bpvectorize html
ipcmutex html
register html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'BiocParallel' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c ipcmutex.cpp -o ipcmutex.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_1.12.0.zip
* DONE (BiocParallel)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'BiocParallel' successfully unpacked and MD5 sums checked
In R CMD INSTALL