Karim Mezhoud
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/canceR |
| Branch: RELEASE_3_6 |
| Last Commit: b980fea |
| Last Changed Date: 2017-10-30 12:40:49 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:25:50 -0400 (Thu, 12 Apr 2018).
| Package 174/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| canceR 1.10.0 Karim Mezhoud
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: canceR |
| Version: 1.10.0 |
| Command: cd canceR.buildbin-libdir/canceR && zip -r ../../canceR_1.10.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:28:07 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:28:55 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 48.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: canceR_1.10.0.zip |
| PackageFileSize: 64.78 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd canceR.buildbin-libdir/canceR && zip -r ../../canceR_1.10.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: canceR.html (332 bytes security) (deflated 47%) adding: canceRs.html (332 bytes security) (deflated 80%) adding: canceR_ind.html (332 bytes security) (deflated 84%) adding: data/ (372 bytes security) (stored 0%) adding: data/brca_tcga73genes.RData (332 bytes security) (deflated 0%) adding: data/brca_tcgaClassifier223.RData (332 bytes security) (deflated 0%) adding: data/brca_tcgaGSEAlm1021.RData (332 bytes security) (deflated 0%) adding: data/Circos.RData (332 bytes security) (deflated 1%) adding: data/ClinicalData.txt (332 bytes security) (deflated 82%) adding: data/gbm_tcgaPlotTwoGenProf.RData (332 bytes security) (deflated 0%) adding: data/GeneExpMatrix.txt (332 bytes security) (deflated 54%) adding: data/GSEA.1.0.R (332 bytes security) (deflated 81%) adding: data/prad_michPhenoTest1021.RData (332 bytes security) (deflated 0%) adding: data/ucec_tcga_pubGSEA1021.RData (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 41%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/canceR.pdf (332 bytes security) (deflated 5%) adding: doc/canceR.Rnw (332 bytes security) (deflated 70%) adding: doc/index.html (332 bytes security) (deflated 57%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/gct_cls/ (372 bytes security) (stored 0%) adding: extdata/gct_cls/Lung_Boston.cls (332 bytes security) (deflated 78%) adding: extdata/gct_cls/Lung_Bost_collapsed_symbols_common_Mich_Bost.gct (332 bytes security) (deflated 58%) adding: extdata/GeneList/ (372 bytes security) (stored 0%) adding: extdata/GeneList/102.txt (332 bytes security) (deflated 49%) adding: extdata/GeneList/1021.txt (332 bytes security) (deflated 43%) adding: extdata/GeneList/223.txt (332 bytes security) (deflated 43%) adding: extdata/GeneList/73.txt (332 bytes security) (deflated 33%) adding: extdata/GeneList/DNA_damage_Response.txt (332 bytes security) (deflated 11%) adding: extdata/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt (332 bytes security) (deflated 24%) adding: extdata/GeneList/INvasion_and_Metastasis.txt (332 bytes security) (deflated 45%) adding: extdata/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt (332 bytes security) (deflated 54%) adding: extdata/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt (332 bytes security) (deflated 17%) adding: extdata/MSigDB/ (372 bytes security) (stored 0%) adding: extdata/MSigDB/c2.cp.reactome.v4.0.symbols.gmt (332 bytes security) (deflated 75%) adding: extdata/MSigDB/c5.bp.v4.0.symbols.gmt (332 bytes security) (deflated 64%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 71%) adding: help/canceR.rdb (332 bytes security) (deflated 5%) adding: help/canceR.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 78%) adding: html/about.html (332 bytes security) (deflated 44%) adding: html/canceR.html (332 bytes security) (deflated 43%) adding: html/canceRHelp.html (332 bytes security) (deflated 45%) adding: html/canceR_Vignette.html (332 bytes security) (deflated 47%) adding: html/cbind.na.html (332 bytes security) (deflated 49%) adding: html/ClinicalData.html (332 bytes security) (deflated 53%) adding: html/dialogGeneClassifier.html (332 bytes security) (deflated 54%) adding: html/dialoggetGeneListMSigDB.html (332 bytes security) (deflated 49%) adding: html/dialogMetOption.html (332 bytes security) (deflated 51%) adding: html/dialogMut.html (332 bytes security) (deflated 56%) adding: html/dialogOptionCircos.html (332 bytes security) (deflated 47%) adding: html/dialogOptionGSEAlm.html (332 bytes security) (deflated 52%) adding: html/dialogOptionPhenoTest.html (332 bytes security) (deflated 48%) adding: html/dialogPlotOption_SkinCor.html (332 bytes security) (deflated 48%) adding: html/dialogSamplingGSEA.html (332 bytes security) (deflated 54%) adding: html/dialogSelectFiles_GSEA.html (332 bytes security) (deflated 49%) adding: html/dialogSpecificMut.html (332 bytes security) (deflated 51%) adding: html/dialogSummary_GSEA.html (332 bytes security) (deflated 54%) adding: html/displayInTable.html (332 bytes security) (deflated 58%) adding: html/GeneExpMatrix.html (332 bytes security) (deflated 67%) adding: html/getCases.html (332 bytes security) (deflated 53%) adding: html/getCasesGenProfs.html (332 bytes security) (deflated 50%) adding: html/getCircos.html (332 bytes security) (deflated 49%) adding: html/getClinicalDataMatrix.html (332 bytes security) (deflated 48%) adding: html/getClinicData_MultipleCases.html (332 bytes security) (deflated 54%) adding: html/getCor_ExpCNAMet.html (332 bytes security) (deflated 51%) adding: html/geteSet.html (332 bytes security) (deflated 46%) adding: html/getGCTCLSExample.html (332 bytes security) (deflated 46%) adding: html/getGCT_CLSfiles.html (332 bytes security) (deflated 48%) adding: html/getGeneExpMatrix.html (332 bytes security) (deflated 48%) adding: html/getGeneList.html (332 bytes security) (deflated 50%) adding: html/getGeneListExample.html (332 bytes security) (deflated 49%) adding: html/getGeneListFromMSigDB.html (332 bytes security) (deflated 46%) adding: html/getGenesClassifier.html (332 bytes security) (deflated 45%) adding: html/getGenesTree_MultipleCases.html (332 bytes security) (deflated 52%) adding: html/getGenesTree_SingleCase.html (332 bytes security) (deflated 49%) adding: html/getGenProfs.html (332 bytes security) (deflated 51%) adding: html/getGSEAlm_Diseases.html (332 bytes security) (deflated 50%) adding: html/getGSEAlm_Variables.html (332 bytes security) (deflated 47%) adding: html/getInTable.html (332 bytes security) (deflated 50%) adding: html/getListProfData.html (332 bytes security) (deflated 52%) adding: html/getMegaProfData.html (332 bytes security) (deflated 49%) adding: html/getMetDataMultipleGenes.html (332 bytes security) (deflated 48%) adding: html/getMSigDB.html (332 bytes security) (deflated 48%) adding: html/getMSigDBExample.html (332 bytes security) (deflated 48%) adding: html/getMSigDBfile.html (332 bytes security) (deflated 46%) adding: html/getMutData.html (332 bytes security) (deflated 46%) adding: html/getPhenoTest.html (332 bytes security) (deflated 46%) adding: html/getProfilesDataMultipleGenes.html (332 bytes security) (deflated 50%) adding: html/getProfilesDataSingleGene.html (332 bytes security) (deflated 50%) adding: html/getSpecificMut.html (332 bytes security) (deflated 48%) adding: html/getSummaryGSEA.html (332 bytes security) (deflated 48%) adding: html/getSurvival.html (332 bytes security) (deflated 45%) adding: html/getTextWin.html (332 bytes security) (deflated 47%) adding: html/GSEA.Analyze.Sets.html (332 bytes security) (deflated 56%) adding: html/GSEA.ConsPlot.html (332 bytes security) (deflated 59%) adding: html/GSEA.EnrichmentScore.html (332 bytes security) (deflated 54%) adding: html/GSEA.EnrichmentScore2.html (332 bytes security) (deflated 54%) adding: html/GSEA.Gct2Frame.html (332 bytes security) (deflated 46%) adding: html/GSEA.Gct2Frame2.html (332 bytes security) (deflated 46%) adding: html/GSEA.GeneRanking.html (332 bytes security) (deflated 60%) adding: html/GSEA.HeatMapPlot.html (332 bytes security) (deflated 43%) adding: html/GSEA.HeatMapPlot2.html (332 bytes security) (deflated 43%) adding: html/GSEA.html (332 bytes security) (deflated 44%) adding: html/GSEA.NormalizeCols.html (332 bytes security) (deflated 47%) adding: html/GSEA.NormalizeRows.html (332 bytes security) (deflated 47%) adding: html/GSEA.ReadClsFile.html (332 bytes security) (deflated 46%) adding: html/GSEA.Res2Frame.html (332 bytes security) (deflated 45%) adding: html/GSEA.Threshold.html (332 bytes security) (deflated 51%) adding: html/GSEA.VarFilter.html (332 bytes security) (deflated 52%) adding: html/GSEA.write.gct.html (332 bytes security) (deflated 48%) adding: html/Match_GeneList_MSigDB.html (332 bytes security) (deflated 47%) adding: html/modalDialog.html (332 bytes security) (deflated 54%) adding: html/myGlobalEnv.html (332 bytes security) (deflated 42%) adding: html/OLD.GSEA.EnrichmentScore.html (332 bytes security) (deflated 49%) adding: html/plotModel.html (332 bytes security) (deflated 52%) adding: html/plot_1Gene_2GenProfs.html (332 bytes security) (deflated 48%) adding: html/plot_2Genes_1GenProf.html (332 bytes security) (deflated 47%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/rbind.na.html (332 bytes security) (deflated 48%) adding: html/Run.GSEA.html (332 bytes security) (deflated 46%) adding: html/setWorkspace.html (332 bytes security) (deflated 51%) adding: html/testCheckedCaseGenProf.html (332 bytes security) (deflated 49%) adding: INDEX (332 bytes security) (deflated 70%) adding: index.html (332 bytes security) (deflated 34%) adding: MD5 (332 bytes security) (deflated 50%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 71%) adding: NEWS (332 bytes security) (deflated 63%) adding: R/ (372 bytes security) (stored 0%) adding: R/canceR (332 bytes security) (deflated 41%) adding: R/canceR.rdb (332 bytes security) (deflated 0%) adding: R/canceR.rdx (332 bytes security) (stored 0%)