Back to Multiple platform build/check report for BioC 3.6
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for blima on veracruz1

This page was generated on 2018-04-12 13:38:41 -0400 (Thu, 12 Apr 2018).

Package 151/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
blima 1.12.0
Vojtěch Kulvait
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/blima
Branch: RELEASE_3_6
Last Commit: 34223f2
Last Changed Date: 2017-10-30 12:40:15 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: blima
Version: 1.12.0
Command: rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh blima_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R blima.buildbin-libdir
StartedAt: 2018-04-12 11:11:04 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:11:30 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 25.5 seconds
RetCode: 0
Status:  OK 
PackageFile: blima_1.12.0.tgz
PackageFileSize: 358.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh blima_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R blima.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=blima.buildbin-libdir blima_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package ‘blima’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c interpolateSortedVector.cpp -o interpolateSortedVector.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o blima.so RcppExports.o interpolateSortedVector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/blima.buildbin-libdir/blima/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (blima)


>>>>>>> 
>>>>>>> FIXING LINKS FOR blima.buildbin-libdir/blima/libs//blima.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "blima.buildbin-libdir/blima/libs//blima.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "blima.buildbin-libdir/blima/libs//blima.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "blima.buildbin-libdir/blima/libs//blima.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "blima.buildbin-libdir/blima/libs//blima.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "blima.buildbin-libdir/blima/libs//blima.so"