Back to Multiple platform build/check report for BioC 3.6
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for ballgown on tokay1

This page was generated on 2018-04-12 13:24:40 -0400 (Thu, 12 Apr 2018).

Package 87/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ballgown 2.10.0
Jack Fu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/ballgown
Branch: RELEASE_3_6
Last Commit: 9b2abdf
Last Changed Date: 2017-10-30 12:40:20 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ballgown
Version: 2.10.0
Command: rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ballgown.buildbin-libdir --merge-multiarch ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ballgown_2.10.0.zip && rm ballgown_2.10.0.tar.gz ballgown_2.10.0.zip
StartedAt: 2018-04-11 18:47:25 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:49:45 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 140.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ballgown.buildbin-libdir --merge-multiarch ballgown_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ballgown_2.10.0.zip  && rm ballgown_2.10.0.tar.gz ballgown_2.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3193k  100 3193k    0     0  23.2M      0 --:--:-- --:--:-- --:--:-- 23.9M

install for i386

* installing *source* package 'ballgown' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'structure' in package 'ballgown'
** help
*** installing help indices
  converting help for package 'ballgown'
    finding HTML links ... done
    annotate_assembly                       html  
    ballgown-class                          html  
    ballgown-constructor                    html  
    ballgown-package                        html  
    ballgownrsem                            html  
    bg                                      html  
    checkAssembledTx                        html  
    clusterTranscripts                      html  
    collapseTranscripts                     html  
    contains                                html  
    dirs                                    html  
    eexpr                                   html  
    expr-replace                            html  
    expr                                    html  
    exprfilter                              html  
    geneIDs                                 html  
    geneNames                               html  
    getAttributeField                       html  
    getGenes                                html  
    gexpr                                   html  
    gffRead                                 html  
    gffReadGR                               html  
    iexpr                                   html  
    indexes-replace                         html  
    indexes                                 html  
    last                                    html  
    mergedDate                              html  
    pData-replace                           html  
    pData                                   html  
    pctOverlap                              html  
    plotLatentTranscripts                   html  
    plotMeans                               html  
    plotTranscripts                         html  
    sampleNames                             html  
    seqnames                                html  
    stattest                                html  
    structure                               html  
    subset                                  html  
    tGene                                   html  
    texpr                                   html  
    transcriptIDs                           html  
    transcriptNames                         html  
    writeFiles                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'ballgown' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ballgown' as ballgown_2.10.0.zip
* DONE (ballgown)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'ballgown' successfully unpacked and MD5 sums checked
In R CMD INSTALL