Lihua Julie Zhu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ChIPpeakAnno |
| Branch: RELEASE_3_6 |
| Last Commit: 2f73a77 |
| Last Changed Date: 2018-02-15 13:40:03 -0400 (Thu, 15 Feb 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:19:47 -0400 (Thu, 12 Apr 2018).
| Package 219/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChIPpeakAnno 3.12.7 Lihua Julie Zhu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ChIPpeakAnno |
| Version: 3.12.7 |
| Command: cd ChIPpeakAnno.buildbin-libdir/ChIPpeakAnno && zip -r ../../ChIPpeakAnno_3.12.7.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:29:56 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:30:39 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 42.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: ChIPpeakAnno_3.12.7.zip |
| PackageFileSize: 34.7 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd ChIPpeakAnno.buildbin-libdir/ChIPpeakAnno && zip -r ../../ChIPpeakAnno_3.12.7.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 58%) adding: data/ (372 bytes security) (stored 0%) adding: data/annotatedPeak.rda (332 bytes security) (deflated 0%) adding: data/datalist (332 bytes security) (deflated 45%) adding: data/enrichedGO.rda (332 bytes security) (stored 0%) adding: data/ExonPlusUtr.human.GRCh37.rda (332 bytes security) (deflated 0%) adding: data/HOT.spots.rda (332 bytes security) (deflated 0%) adding: data/myPeakList.rda (332 bytes security) (deflated 0%) adding: data/Peaks.Ste12.Replicate1.rda (332 bytes security) (stored 0%) adding: data/Peaks.Ste12.Replicate2.rda (332 bytes security) (stored 0%) adding: data/Peaks.Ste12.Replicate3.rda (332 bytes security) (stored 0%) adding: data/TSS.human.GRCh37.rda (332 bytes security) (deflated 0%) adding: data/TSS.human.GRCh38.rda (332 bytes security) (deflated 0%) adding: data/TSS.human.NCBI36.rda (332 bytes security) (deflated 0%) adding: data/TSS.mouse.GRCm38.rda (332 bytes security) (deflated 0%) adding: data/TSS.mouse.NCBIM37.rda (332 bytes security) (deflated 0%) adding: data/TSS.rat.RGSC3.4.rda (332 bytes security) (deflated 0%) adding: data/TSS.rat.Rnor_5.0.rda (332 bytes security) (deflated 0%) adding: data/TSS.zebrafish.Zv8.rda (332 bytes security) (deflated 0%) adding: data/TSS.zebrafish.Zv9.rda (332 bytes security) (deflated 0%) adding: data/wgEncodeTfbsV3.rda (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 46%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/ChIPpeakAnno.html (332 bytes security) (deflated 59%) adding: doc/ChIPpeakAnno.R (332 bytes security) (deflated 77%) adding: doc/ChIPpeakAnno.Rmd (332 bytes security) (deflated 71%) adding: doc/FAQs.html (332 bytes security) (deflated 66%) adding: doc/FAQs.R (332 bytes security) (deflated 66%) adding: doc/FAQs.Rmd (332 bytes security) (deflated 59%) adding: doc/index.html (332 bytes security) (deflated 77%) adding: doc/pipeline.html (332 bytes security) (deflated 56%) adding: doc/pipeline.R (332 bytes security) (deflated 67%) adding: doc/pipeline.Rmd (332 bytes security) (deflated 64%) adding: doc/quickStart.html (332 bytes security) (deflated 64%) adding: doc/quickStart.R (332 bytes security) (deflated 67%) adding: doc/quickStart.Rmd (332 bytes security) (deflated 61%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/annotatedPeaks.2.10.0.rds (332 bytes security) (deflated 1%) adding: extdata/cvglist.rds (332 bytes security) (deflated 1%) adding: extdata/examplePattern.fa (332 bytes security) (deflated 24%) adding: extdata/gadem.rda (332 bytes security) (deflated 4%) adding: extdata/GFF_peaks.gff (332 bytes security) (deflated 76%) adding: extdata/GSM700906_AA86_vs_INPUT_WS170.bed (332 bytes security) (deflated 62%) adding: extdata/GSM700907_DAF-12_TAP_vs_INPUT_#1_WS170.bed (332 bytes security) (deflated 63%) adding: extdata/GSM700908_DAF-12_TAP_vs_INPUT_#2_WS170.bed (332 bytes security) (deflated 63%) adding: extdata/GSM700909_DAF-12_TAP_vs_INPUT_#3_WS170.bed (332 bytes security) (deflated 63%) adding: extdata/guide-seq-peaks.txt (332 bytes security) (deflated 78%) adding: extdata/MACS2_peaks.xls (332 bytes security) (deflated 69%) adding: extdata/MACS_output.bed (332 bytes security) (deflated 65%) adding: extdata/MACS_peaks.xls (332 bytes security) (deflated 48%) adding: extdata/peaks.narrowPeak (332 bytes security) (deflated 66%) adding: extdata/peaks_hg19.bed (332 bytes security) (deflated 63%) adding: extdata/ref.gtf (332 bytes security) (deflated 33%) adding: extdata/TAF.bigWig (332 bytes security) (deflated 32%) adding: extdata/TAF.broadPeak (332 bytes security) (deflated 67%) adding: extdata/Tead4.bigWig (332 bytes security) (deflated 44%) adding: extdata/Tead4.broadPeak (332 bytes security) (deflated 69%) adding: extdata/test.bed (332 bytes security) (deflated 12%) adding: extdata/wgEncodeUmassDekker5CGm12878PkV2.bed.gz (332 bytes security) (stored 0%) adding: extdata/WS220.bed (332 bytes security) (deflated 76%) adding: extdata/YY1.bigWig (332 bytes security) (deflated 32%) adding: extdata/YY1.broadPeak (332 bytes security) (deflated 69%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 70%) adding: help/ChIPpeakAnno.rdb (332 bytes security) (deflated 1%) adding: help/ChIPpeakAnno.rdx (332 bytes security) (deflated 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 79%) adding: html/addAncestors.html (332 bytes security) (deflated 52%) adding: html/addGeneIDs.html (332 bytes security) (deflated 65%) adding: html/addMetadata.html (332 bytes security) (deflated 60%) adding: html/annoGR.html (332 bytes security) (deflated 68%) adding: html/annoPeaks.html (332 bytes security) (deflated 64%) adding: html/annotatedPeak.html (332 bytes security) (deflated 56%) adding: html/annotatePeakInBatch.html (332 bytes security) (deflated 69%) adding: html/assignChromosomeRegion.html (332 bytes security) (deflated 69%) adding: html/bdp.html (332 bytes security) (deflated 57%) adding: html/BED2RangedData.html (332 bytes security) (deflated 57%) adding: html/bindist.html (332 bytes security) (deflated 59%) adding: html/binOverFeature.html (332 bytes security) (deflated 65%) adding: html/binOverGene.html (332 bytes security) (deflated 58%) adding: html/binOverRegions.html (332 bytes security) (deflated 59%) adding: html/ChIPpeakAnno-deprecated.html (332 bytes security) (deflated 65%) adding: html/ChIPpeakAnno-package.html (332 bytes security) (deflated 54%) adding: html/condenseMatrixByColnames.html (332 bytes security) (deflated 55%) adding: html/convert2EntrezID.html (332 bytes security) (deflated 56%) adding: html/countPatternInSeqs.html (332 bytes security) (deflated 57%) adding: html/cumulativePercentage.html (332 bytes security) (deflated 54%) adding: html/egOrgMap.html (332 bytes security) (deflated 52%) adding: html/enrichedGO.html (332 bytes security) (deflated 70%) adding: html/estFragmentLength.html (332 bytes security) (deflated 56%) adding: html/estLibSize.html (332 bytes security) (deflated 54%) adding: html/ExonPlusUtr.human.GRCh37.html (332 bytes security) (deflated 59%) adding: html/featureAlignedDistribution.html (332 bytes security) (deflated 63%) adding: html/featureAlignedExtentSignal.html (332 bytes security) (deflated 65%) adding: html/featureAlignedHeatmap.html (332 bytes security) (deflated 65%) adding: html/featureAlignedSignal.html (332 bytes security) (deflated 61%) adding: html/findEnhancers.html (332 bytes security) (deflated 64%) adding: html/findOverlappingPeaks.html (332 bytes security) (deflated 63%) adding: html/findOverlapsOfPeaks.html (332 bytes security) (deflated 63%) adding: html/findVennCounts.html (332 bytes security) (deflated 58%) adding: html/getAllPeakSequence.html (332 bytes security) (deflated 59%) adding: html/getAnnotation.html (332 bytes security) (deflated 57%) adding: html/getEnrichedGO.html (332 bytes security) (deflated 69%) adding: html/getEnrichedPATH.html (332 bytes security) (deflated 64%) adding: html/getGeneSeq.html (332 bytes security) (deflated 67%) adding: html/getUniqueGOidCount.html (332 bytes security) (deflated 58%) adding: html/getVennCounts.html (332 bytes security) (deflated 61%) adding: html/GFF2RangedData.html (332 bytes security) (deflated 55%) adding: html/HOT.spots.html (332 bytes security) (deflated 54%) adding: html/hyperGtest.html (332 bytes security) (deflated 67%) adding: html/IDRfilter.html (332 bytes security) (deflated 58%) adding: html/makeVennDiagram.html (332 bytes security) (deflated 64%) adding: html/mergePlusMinusPeaks.html (332 bytes security) (deflated 63%) adding: html/myPeakList.html (332 bytes security) (deflated 47%) adding: html/oligoFrequency.html (332 bytes security) (deflated 54%) adding: html/oligoSummary.html (332 bytes security) (deflated 61%) adding: html/peakPermTest.html (332 bytes security) (deflated 63%) adding: html/Peaks.Ste12.Replicate1.html (332 bytes security) (deflated 50%) adding: html/Peaks.Ste12.Replicate2.html (332 bytes security) (deflated 50%) adding: html/Peaks.Ste12.Replicate3.html (332 bytes security) (deflated 50%) adding: html/peaksNearBDP.html (332 bytes security) (deflated 63%) adding: html/permPool.html (332 bytes security) (deflated 51%) adding: html/pie1.html (332 bytes security) (deflated 64%) adding: html/plotBinOverRegions.html (332 bytes security) (deflated 53%) adding: html/preparePool.html (332 bytes security) (deflated 62%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/reCenterPeaks.html (332 bytes security) (deflated 52%) adding: html/summarizeOverlapsByBins.html (332 bytes security) (deflated 66%) adding: html/summarizePatternInPeaks.html (332 bytes security) (deflated 60%) adding: html/tileCount.html (332 bytes security) (deflated 63%) adding: html/tileGRanges.html (332 bytes security) (deflated 60%) adding: html/toGRanges.html (332 bytes security) (deflated 67%) adding: html/translatePattern.html (332 bytes security) (deflated 52%) adding: html/TSS.human.GRCh37.html (332 bytes security) (deflated 52%) adding: html/TSS.human.GRCh38.html (332 bytes security) (deflated 51%) adding: html/TSS.human.NCBI36.html (332 bytes security) (deflated 52%) adding: html/TSS.mouse.GRCm38.html (332 bytes security) (deflated 53%) adding: html/TSS.mouse.NCBIM37.html (332 bytes security) (deflated 53%) adding: html/TSS.rat.RGSC3.4.html (332 bytes security) (deflated 53%) adding: html/TSS.rat.Rnor_5.0.html (332 bytes security) (deflated 53%) adding: html/TSS.zebrafish.Zv8.html (332 bytes security) (deflated 52%) adding: html/TSS.zebrafish.Zv9.html (332 bytes security) (deflated 52%) adding: html/wgEncodeTfbsV3.html (332 bytes security) (deflated 58%) adding: html/write2FASTA.html (332 bytes security) (deflated 52%) adding: html/xget.html (332 bytes security) (deflated 52%) adding: INDEX (332 bytes security) (deflated 69%) adding: MD5 (332 bytes security) (deflated 50%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 60%) adding: NEWS (332 bytes security) (deflated 75%) adding: R/ (372 bytes security) (stored 0%) adding: R/ChIPpeakAnno (332 bytes security) (deflated 41%) adding: R/ChIPpeakAnno.rdb (332 bytes security) (deflated 9%) adding: R/ChIPpeakAnno.rdx (332 bytes security) (stored 0%)