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INSTALL report for CAGEr on tokay1

This page was generated on 2018-04-12 13:22:33 -0400 (Thu, 12 Apr 2018).

Package 171/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAGEr 1.20.0
Vanja Haberle , Charles Plessy
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/CAGEr
Branch: RELEASE_3_6
Last Commit: 91d4ab7
Last Changed Date: 2017-10-30 12:39:59 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CAGEr
Version: 1.20.0
Command: rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CAGEr.buildbin-libdir --merge-multiarch CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CAGEr_1.20.0.zip && rm CAGEr_1.20.0.tar.gz CAGEr_1.20.0.zip
StartedAt: 2018-04-11 18:50:48 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:52:33 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 105.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CAGEr.buildbin-libdir --merge-multiarch CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CAGEr_1.20.0.zip  && rm CAGEr_1.20.0.tar.gz CAGEr_1.20.0.zip
###
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install for i386

* installing *source* package 'CAGEr' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CAGEr'
    finding HTML links ... done
    CAGEr-package                           html  
    CAGEset-class                           html  
    CTSSclusteringMethod                    html  
    CTSScoordinates                         html  
    CTSSnormalizedTpm                       html  
    CTSStagCount                            html  
    FANTOM5humanSamples                     html  
    FANTOM5mouseSamples                     html  
    aggregateTagClusters                    html  
    clusterCTSS                             html  
    consensusClusters                       html  
    consensusClustersTpm                    html  
    cumulativeCTSSdistribution              html  
    exampleCAGEset                          html  
    exportCTSStoBedGraph                    html  
    exportToBed                             html  
    expressionClasses                       html  
    extractExpressionClass                  html  
    genomeName                              html  
    getCTSS                                 html  
    getExpressionProfiles                   html  
    getShiftingPromoters                    html  
    importPublicData                        html  
    inputFiles                              html  
    inputFilesType                          html  
    librarySizes                            html  
    mergeCAGEsets                           html  
    mergeSamples                            html  
    normalizeTagCount                       html  
    plotCorrelation                         html  
    plotExpressionProfiles                  html  
    plotInterquantileWidth                  html  
    plotReverseCumulatives                  html  
    quantilePositions                       html  
    sampleLabels                            html  
    scoreShift                              html  
    setColors                               html  
    show-methods                            html  
    tagClusters                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CAGEr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAGEr' as CAGEr_1.20.0.zip
* DONE (CAGEr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'CAGEr' successfully unpacked and MD5 sums checked
In R CMD INSTALL