Back to Multiple platform build/check report for BioC 3.6
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for BaalChIP on tokay1

This page was generated on 2018-04-12 13:28:43 -0400 (Thu, 12 Apr 2018).

Package 81/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BaalChIP 1.4.0
Ines de Santiago
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/BaalChIP
Branch: RELEASE_3_6
Last Commit: dc97499
Last Changed Date: 2017-10-30 12:41:22 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BaalChIP
Version: 1.4.0
Command: cd BaalChIP.buildbin-libdir/BaalChIP && zip -r ../../BaalChIP_1.4.0.zip . & cd ../..
StartedAt: 2018-04-12 04:24:31 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 04:25:22 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 50.6 seconds
RetCode: 0
Status:  OK  
PackageFile: BaalChIP_1.4.0.zip
PackageFileSize: 212.9 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd BaalChIP.buildbin-libdir/BaalChIP && zip -r ../../BaalChIP_1.4.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: data/ (372 bytes security) (stored 0%)
  adding: data/datalist (332 bytes security) (deflated 14%)
  adding: data/Rdata.rdb (332 bytes security) (deflated 2%)
  adding: data/Rdata.rds (332 bytes security) (stored 0%)
  adding: data/Rdata.rdx (332 bytes security) (stored 0%)
  adding: DESCRIPTION (332 bytes security) (deflated 42%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/BaalChIP.html (332 bytes security) (deflated 54%)
  adding: doc/BaalChIP.R (332 bytes security) (deflated 81%)
  adding: doc/BaalChIP.Rmd (332 bytes security) (deflated 68%)
  adding: doc/index.html (332 bytes security) (deflated 58%)
  adding: extra/ (372 bytes security) (stored 0%)
  adding: extra/get.overlaps.v2_chrXY.perl (332 bytes security) (deflated 70%)
  adding: extra/run_simulations.sh (332 bytes security) (deflated 60%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 73%)
  adding: help/BaalChIP.rdb (332 bytes security) (deflated 1%)
  adding: help/BaalChIP.rdx (332 bytes security) (stored 0%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 79%)
  adding: html/adjustmentBaalPlot.html (332 bytes security) (deflated 54%)
  adding: html/alleleCounts.html (332 bytes security) (deflated 57%)
  adding: html/BaalChIP.get.html (332 bytes security) (deflated 57%)
  adding: html/BaalChIP.html (332 bytes security) (deflated 62%)
  adding: html/BaalChIP.report.html (332 bytes security) (deflated 64%)
  adding: html/BaalChIP.run.html (332 bytes security) (deflated 59%)
  adding: html/BaalObject.html (332 bytes security) (deflated 45%)
  adding: html/blacklist_hg19.html (332 bytes security) (deflated 48%)
  adding: html/ENCODEexample.html (332 bytes security) (deflated 47%)
  adding: html/FAIREexample.html (332 bytes security) (deflated 46%)
  adding: html/filter1allele.html (332 bytes security) (deflated 56%)
  adding: html/filterIntbias.html (332 bytes security) (deflated 62%)
  adding: html/getASB.html (332 bytes security) (deflated 60%)
  adding: html/mergePerGroup.html (332 bytes security) (deflated 55%)
  adding: html/pickrell2011cov1_hg19.html (332 bytes security) (deflated 51%)
  adding: html/plotQC.html (332 bytes security) (deflated 59%)
  adding: html/plotSimul.html (332 bytes security) (deflated 50%)
  adding: html/QCfilter.html (332 bytes security) (deflated 58%)
  adding: html/R.css (332 bytes security) (deflated 75%)
  adding: html/summaryASB.html (332 bytes security) (deflated 51%)
  adding: html/summaryQC.html (332 bytes security) (deflated 53%)
  adding: html/UniqueMappability50bp_hg19.html (332 bytes security) (deflated 55%)
  adding: INDEX (332 bytes security) (deflated 66%)
  adding: MD5 (332 bytes security) (deflated 56%)
  adding: Meta/ (372 bytes security) (stored 0%)
  adding: Meta/data.rds (332 bytes security) (stored 0%)
  adding: Meta/features.rds (332 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (332 bytes security) (stored 0%)
  adding: Meta/links.rds (332 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
  adding: Meta/package.rds (332 bytes security) (stored 0%)
  adding: Meta/Rd.rds (332 bytes security) (stored 0%)
  adding: Meta/vignette.rds (332 bytes security) (stored 0%)
  adding: NAMESPACE (332 bytes security) (deflated 66%)
  adding: NEWS (332 bytes security) (deflated 48%)
  adding: R/ (372 bytes security) (stored 0%)
  adding: R/BaalChIP (332 bytes security) (deflated 41%)
  adding: R/BaalChIP.rdb (332 bytes security) (deflated 24%)
  adding: R/BaalChIP.rdx (332 bytes security) (deflated 0%)
  adding: test/ (372 bytes security) (stored 0%)
  adding: test/AMOVC_hetSNP.txt (332 bytes security) (deflated 60%)
  adding: test/BaalChIP-Ex.timings (332 bytes security) (deflated 58%)
  adding: test/bamFiles/ (372 bytes security) (stored 0%)
  adding: test/bamFiles/AMOVC_1.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_1.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/AMOVC_1_gDNA.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_1_gDNA.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/AMOVC_2.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_2.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/AMOVC_2_gDNA.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_2_gDNA.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PAX5_Rep1.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_PAX5_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PAX5_Rep2.bam (332 bytes security) (stored 0%)
  adding: test/bamFiles/GM12891_PAX5_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_POL2_Rep1.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_POL2_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_POL2_Rep2.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_POL2_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PU1_Rep1.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_PU1_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PU1_Rep2.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_PU1_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_TAF1_Rep1.bam (332 bytes security) (stored 0%)
  adding: test/bamFiles/GM12891_TAF1_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_TAF1_Rep2.bam (332 bytes security) (stored 0%)
  adding: test/bamFiles/GM12891_TAF1_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cFOS_Rep1.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cFOS_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cFOS_Rep2.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cFOS_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cMYC_Rep1.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cMYC_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cMYC_Rep2.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cMYC_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_POL2_Rep1.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_POL2_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_POL2_Rep2.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_POL2_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_STAT3_Rep1.bam (332 bytes security) (stored 0%)
  adding: test/bamFiles/MCF7_STAT3_Rep1.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_STAT3_Rep2.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_STAT3_Rep2.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_1.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_1.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_1_gDNA.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_1_gDNA.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_2.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_2.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_2_gDNA.test.bam (332 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_2_gDNA.test.bam.bai (332 bytes security) (deflated 100%)
  adding: test/bedFiles/ (372 bytes security) (stored 0%)
  adding: test/bedFiles/AMOVC_peaks_example.bed (332 bytes security) (deflated 62%)
  adding: test/bedFiles/GM12891_PAX5.bed (332 bytes security) (deflated 69%)
  adding: test/bedFiles/GM12891_POL2.bed (332 bytes security) (deflated 68%)
  adding: test/bedFiles/GM12891_POU2F2.bed (332 bytes security) (deflated 68%)
  adding: test/bedFiles/GM12891_PU1.bed (332 bytes security) (deflated 67%)
  adding: test/bedFiles/GM12891_TAF1.bed (332 bytes security) (deflated 65%)
  adding: test/bedFiles/GM12891_YY1.bed (332 bytes security) (deflated 63%)
  adding: test/bedFiles/MCF7_cFOS.bed (332 bytes security) (deflated 70%)
  adding: test/bedFiles/MCF7_cMYC.bed (332 bytes security) (deflated 69%)
  adding: test/bedFiles/MCF7_POL2.bed (332 bytes security) (deflated 69%)
  adding: test/bedFiles/MCF7_STAT3.bed (332 bytes security) (deflated 70%)
  adding: test/bedFiles/TaT1_peaks_example.bed (332 bytes security) (deflated 62%)
  adding: test/exampleChIP.tsv (332 bytes security) (deflated 79%)
  adding: test/exampleChIP1.tsv (332 bytes security) (deflated 79%)
  adding: test/exampleChIP2.tsv (332 bytes security) (deflated 62%)
  adding: test/GM12891_hetSNP.txt (332 bytes security) (deflated 58%)
  adding: test/MCF7_hetSNP.txt (332 bytes security) (deflated 58%)
  adding: test/simuloutput/ (372 bytes security) (stored 0%)
  adding: test/simuloutput/c67c6ec6c433_aln32.bam (332 bytes security) (deflated 22%)
  adding: test/simuloutput/c67c6ec6c433_aln32.bam.bai (332 bytes security) (deflated 100%)
  adding: test/simuloutput/c67c6ec6c433_aln32.fasta (332 bytes security) (deflated 93%)
  adding: test/simuloutput/c67c6ec6c433_aln32.fasta.sam (332 bytes security) (deflated 97%)
  adding: test/simuloutput/c67c6ec6c433_aln32_snplist.txt (332 bytes security) (deflated 63%)
  adding: test/simuloutput/c67c6ec6c433_aln34.bam (332 bytes security) (deflated 21%)
  adding: test/simuloutput/c67c6ec6c433_aln34.bam.bai (332 bytes security) (deflated 100%)
  adding: test/simuloutput/c67c6ec6c433_aln34.fasta (332 bytes security) (deflated 93%)
  adding: test/simuloutput/c67c6ec6c433_aln34.fasta.sam (332 bytes security) (deflated 94%)
  adding: test/simuloutput/c67c6ec6c433_aln36.bam (332 bytes security) (deflated 23%)
  adding: test/simuloutput/c67c6ec6c433_aln36.bam.bai (332 bytes security) (deflated 100%)
  adding: test/simuloutput/c67c6ec6c433_aln36.fasta (332 bytes security) (deflated 93%)
  adding: test/simuloutput/c67c6ec6c433_aln36.fasta.sam (332 bytes security) (deflated 94%)
  adding: test/simuloutput/c67c6ec6c433_snplist.txt (332 bytes security) (deflated 63%)
  adding: test/TaT1_hetSNP.txt (332 bytes security) (deflated 59%)
  adding: unitTests/ (372 bytes security) (stored 0%)
  adding: unitTests/test_get_allele_counts.R (332 bytes security) (deflated 56%)