Back to Multiple platform build/check report for BioC 3.6
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for ASpli on veracruz1

This page was generated on 2018-04-12 13:43:23 -0400 (Thu, 12 Apr 2018).

Package 75/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpli 1.4.0
Estefania Mancini
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/ASpli
Branch: RELEASE_3_6
Last Commit: b176d95
Last Changed Date: 2017-10-30 12:41:21 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: ASpli
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ASpli_1.4.0.tar.gz
StartedAt: 2018-04-12 00:33:25 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 00:39:18 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 352.5 seconds
RetCode: 0
Status:  OK 
CheckDir: ASpli.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ASpli_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/ASpli.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
plotGenomicRegions  13.666  0.085  13.946
ASpli-package       10.885  0.091  11.106
plotBins             8.930  0.039   9.067
AsDiscover-methods   7.617  0.092   7.795
mergeBinDUAS-method  6.039  0.029   6.129
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ASpli.Rcheck/00install.out

* installing *source* package ‘ASpli’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ASpli)

Tests output


Example timings

ASpli.Rcheck/ASpli-Ex.timings

nameusersystemelapsed
ASpli-package10.885 0.09111.106
AsDiscover-methods7.6170.0927.795
DUreport3.9180.0193.985
DUreportBinSplice-method4.0730.0194.389
acc_AS0.0220.0010.022
acc_DU0.0210.0000.023
acc_counts0.0200.0010.026
acc_features0.3180.0010.361
binGenome2.3420.0192.524
containsJunctions-function4.0970.0204.397
example_data0.4650.0090.514
filterDU-method4.0640.0184.361
getConditions-function0.0070.0000.007
junctionDUreport3.7890.0203.879
loadBAM0.1220.0020.125
mergeBinDUAS-method6.0390.0296.129
plotBins8.9300.0399.067
plotGenomicRegions13.666 0.08513.946
rds4.3670.0204.449
readCounts3.7670.0183.843
subset-methods4.8090.0204.884