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CHECK report for AMOUNTAIN on veracruz1

This page was generated on 2018-04-12 13:43:14 -0400 (Thu, 12 Apr 2018).

Package 39/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AMOUNTAIN 1.4.0
Dong Li
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/AMOUNTAIN
Branch: RELEASE_3_6
Last Commit: e48db50
Last Changed Date: 2017-10-30 12:41:20 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: AMOUNTAIN
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings AMOUNTAIN_1.4.0.tar.gz
StartedAt: 2018-04-12 00:17:11 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 00:17:31 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 19.7 seconds
RetCode: 0
Status:  OK 
CheckDir: AMOUNTAIN.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings AMOUNTAIN_1.4.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/AMOUNTAIN.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AMOUNTAIN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AMOUNTAIN’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AMOUNTAIN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

AMOUNTAIN.Rcheck/00install.out

* installing *source* package ‘AMOUNTAIN’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c AMOUNTAIN.c -o AMOUNTAIN.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o AMOUNTAIN.so AMOUNTAIN.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/AMOUNTAIN.Rcheck/AMOUNTAIN/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AMOUNTAIN)

Tests output


Example timings

AMOUNTAIN.Rcheck/AMOUNTAIN-Ex.timings

nameusersystemelapsed
CGPFixSS0.0030.0010.003
CGPFixSSMultiLayer0.0350.0010.036
CGPFixSSTwolayer0.0200.0020.023
EuclideanProjectionENNORM0.0020.0000.002
moduleIdentificationGPFixSS0.0900.0030.094
moduleIdentificationGPFixSSMultilayer0.0270.0010.034
moduleIdentificationGPFixSSTwolayer0.0340.0030.041
multilayernetworkSimulation0.0020.0000.002
networkSimulation0.0030.0000.003
twolayernetworkSimulation0.0030.0010.004