Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.6: CHECK report for CATALYST on tokay1

This page was generated on 2017-08-16 13:37:50 -0400 (Wed, 16 Aug 2017).

Package 176/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.1.5
Helena Lucia Crowell
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CATALYST
Last Changed Rev: 131669 / Revision: 131943
Last Changed Date: 2017-07-31 10:07:34 -0400 (Mon, 31 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CATALYST
Version: 1.1.5
Command: rm -rf CATALYST.buildbin-libdir CATALYST.Rcheck && mkdir CATALYST.buildbin-libdir CATALYST.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CATALYST.buildbin-libdir CATALYST_1.1.5.tar.gz >CATALYST.Rcheck\00install.out 2>&1 && cp CATALYST.Rcheck\00install.out CATALYST-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CATALYST.buildbin-libdir --install="check:CATALYST-install.out" --force-multiarch --no-vignettes --timings CATALYST_1.1.5.tar.gz
StartedAt: 2017-08-15 22:12:13 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 22:16:48 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 275.7 seconds
RetCode: 0
Status:  OK  
CheckDir: CATALYST.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CATALYST.buildbin-libdir CATALYST.Rcheck && mkdir CATALYST.buildbin-libdir CATALYST.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CATALYST.buildbin-libdir CATALYST_1.1.5.tar.gz >CATALYST.Rcheck\00install.out 2>&1 && cp CATALYST.Rcheck\00install.out CATALYST-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CATALYST.buildbin-libdir --install="check:CATALYST-install.out" --force-multiarch --no-vignettes --timings CATALYST_1.1.5.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/CATALYST.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CATALYST/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CATALYST' version '1.1.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CATALYST' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.9Mb
  sub-directories of 1Mb or more:
    data   2.3Mb
    doc    6.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
normCytof 8.36   0.09    8.55
estTrim   5.92   0.05    7.04
plotMahal 5.69   0.00    5.68
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
normCytof 9.38   0.02    9.39
estTrim   7.17   0.03    7.21
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/CATALYST.Rcheck/00check.log'
for details.


CATALYST.Rcheck/00install.out:


install for i386

* installing *source* package 'CATALYST' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CATALYST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CATALYST' as CATALYST_1.1.5.zip
* DONE (CATALYST)

CATALYST.Rcheck/examples_i386/CATALYST-Ex.timings:

nameusersystemelapsed
applyCutoffs3.520.023.54
assignPrelim1.640.031.68
compCytof3.210.033.25
computeSpillmat2.460.022.47
concatFCS0.040.010.06
data0.000.020.02
dbFrame-methods1.520.001.51
estCutoffs3.190.003.19
estTrim5.920.057.04
normCytof8.360.098.55
outFCS2.550.002.55
outFrames1.940.001.93
plotEvents3.000.033.04
plotMahal5.690.005.68
plotSpillmat2.750.022.77
plotYields2.900.032.94

CATALYST.Rcheck/examples_x64/CATALYST-Ex.timings:

nameusersystemelapsed
applyCutoffs3.920.053.97
assignPrelim1.660.011.67
compCytof2.950.002.96
computeSpillmat2.550.042.57
concatFCS0.060.000.07
data0.000.010.01
dbFrame-methods1.970.001.97
estCutoffs4.140.034.17
estTrim7.170.037.21
normCytof9.380.029.39
outFCS2.510.002.51
outFrames2.180.012.19
plotEvents3.340.003.34
plotMahal4.980.004.99
plotSpillmat3.190.003.18
plotYields3.30.03.3