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BioC 3.6: BUILD report for BSgenome on veracruz1

This page was generated on 2017-08-16 13:39:24 -0400 (Wed, 16 Aug 2017).

Package 155/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.45.1
H. Pagès
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BSgenome
Last Changed Rev: 129205 / Revision: 131943
Last Changed Date: 2017-04-26 20:02:21 -0400 (Wed, 26 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  ERROR 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR  OK 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK [ OK ] ERROR  OK 

Summary

Package: BSgenome
Version: 1.45.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2017-08-15 18:38:39 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:40:28 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 109.0 seconds
RetCode: 0
Status:  OK 
PackageFile: BSgenome_1.45.1.tar.gz
PackageFileSize: 5.809 MiB

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/tests’ is empty
* building ‘BSgenome_1.45.1.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh’