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BioC 3.6: CHECK report for ASpli on veracruz1

This page was generated on 2017-08-16 13:49:13 -0400 (Wed, 16 Aug 2017).

Package 71/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpli 1.3.1
Estefania Mancini , Javier Iserte
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ASpli
Last Changed Rev: 131898 / Revision: 131943
Last Changed Date: 2017-08-11 09:14:08 -0400 (Fri, 11 Aug 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: ASpli
Version: 1.3.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ASpli_1.3.1.tar.gz
StartedAt: 2017-08-16 00:02:15 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 00:19:29 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 1034.2 seconds
RetCode: 0
Status:  OK 
CheckDir: ASpli.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ASpli_1.3.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/ASpli.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.3.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
DUreport_DEXSeq    117.719  5.974 126.990
ASpli-package       85.134  5.857  93.803
acc_AS              74.094  7.866  84.398
plotTopTags         72.592  5.056  79.506
AsDiscover-methods  69.780  6.110  78.122
acc_counts          59.553  7.041  68.311
acc_DU              60.584  5.778  68.616
DUreport            54.917  5.176  61.852
readCounts          47.510  5.126  54.581
acc_features        13.365  0.073  13.704
binGenome           12.534  0.036  12.811
loadBAM             11.610  0.822  12.692
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ASpli.Rcheck/00install.out:

* installing *source* package ‘ASpli’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ASpli)

ASpli.Rcheck/ASpli-Ex.timings:

nameusersystemelapsed
ASpli-package85.134 5.85793.803
AsDiscover-methods69.780 6.11078.122
DUreport54.917 5.17661.852
DUreport_DEXSeq117.719 5.974126.990
acc_AS74.094 7.86684.398
acc_DU60.584 5.77868.616
acc_counts59.553 7.04168.311
acc_features13.365 0.07313.704
binGenome12.534 0.03612.811
loadBAM11.610 0.82212.692
plotTopTags72.592 5.05679.506
readCounts47.510 5.12654.581