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BioC 3.6: CHECK report for ASpli on tokay1

This page was generated on 2017-08-16 13:36:41 -0400 (Wed, 16 Aug 2017).

Package 71/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpli 1.3.1
Estefania Mancini , Javier Iserte
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ASpli
Last Changed Rev: 131898 / Revision: 131943
Last Changed Date: 2017-08-11 09:14:08 -0400 (Fri, 11 Aug 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ASpli
Version: 1.3.1
Command: rm -rf ASpli.buildbin-libdir ASpli.Rcheck && mkdir ASpli.buildbin-libdir ASpli.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASpli.buildbin-libdir ASpli_1.3.1.tar.gz >ASpli.Rcheck\00install.out 2>&1 && cp ASpli.Rcheck\00install.out ASpli-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ASpli.buildbin-libdir --install="check:ASpli-install.out" --force-multiarch --no-vignettes --timings ASpli_1.3.1.tar.gz
StartedAt: 2017-08-15 21:46:57 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 22:14:22 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 1645.1 seconds
RetCode: 0
Status:  OK  
CheckDir: ASpli.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ASpli.buildbin-libdir ASpli.Rcheck && mkdir ASpli.buildbin-libdir ASpli.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASpli.buildbin-libdir ASpli_1.3.1.tar.gz >ASpli.Rcheck\00install.out 2>&1 && cp ASpli.Rcheck\00install.out ASpli-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ASpli.buildbin-libdir --install="check:ASpli-install.out" --force-multiarch --no-vignettes --timings ASpli_1.3.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ASpli.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '1.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
DUreport_DEXSeq    99.33   4.28  103.62
ASpli-package      80.16   5.85   86.08
AsDiscover-methods 61.30   2.65   63.94
plotTopTags        60.40   1.25   61.66
acc_AS             56.73   2.30   59.03
DUreport           50.63   3.06   53.69
acc_DU             50.24   1.28   51.52
readCounts         47.45   2.09   49.55
acc_counts         43.79   1.95   45.75
loadBAM            11.18   0.34   11.51
binGenome           8.85   0.03    8.90
acc_features        8.65   0.02    8.65
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
DUreport_DEXSeq    92.56   2.85   95.40
ASpli-package      78.47   4.89   83.36
AsDiscover-methods 71.23   5.28   76.56
plotTopTags        68.85   0.95   69.80
readCounts         60.62   0.55   61.52
acc_AS             58.27   1.50   59.77
DUreport           51.16   3.29   54.45
acc_DU             51.98   1.01   53.00
acc_counts         47.49   1.71   49.19
acc_features       12.28   0.01   12.29
loadBAM            11.32   0.30   11.61
binGenome          10.96   0.06   11.03
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

ASpli.Rcheck/00install.out:


install for i386

* installing *source* package 'ASpli' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_1.3.1.zip
* DONE (ASpli)

ASpli.Rcheck/examples_i386/ASpli-Ex.timings:

nameusersystemelapsed
ASpli-package80.16 5.8586.08
AsDiscover-methods61.30 2.6563.94
DUreport50.63 3.0653.69
DUreport_DEXSeq 99.33 4.28103.62
acc_AS56.73 2.3059.03
acc_DU50.24 1.2851.52
acc_counts43.79 1.9545.75
acc_features8.650.028.65
binGenome8.850.038.90
loadBAM11.18 0.3411.51
plotTopTags60.40 1.2561.66
readCounts47.45 2.0949.55

ASpli.Rcheck/examples_x64/ASpli-Ex.timings:

nameusersystemelapsed
ASpli-package78.47 4.8983.36
AsDiscover-methods71.23 5.2876.56
DUreport51.16 3.2954.45
DUreport_DEXSeq92.56 2.8595.40
acc_AS58.27 1.5059.77
acc_DU51.98 1.0153.00
acc_counts47.49 1.7149.19
acc_features12.28 0.0112.29
binGenome10.96 0.0611.03
loadBAM11.32 0.3011.61
plotTopTags68.85 0.9569.80
readCounts60.62 0.5561.52