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BioC experimental data: CHECK report for pRolocdata on malbec2

This page was generated on 2017-10-18 15:09:35 -0400 (Wed, 18 Oct 2017).

Package 227/314HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.14.0
Laurent Gatto
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/pRolocdata
Branch: RELEASE_3_5
Last Commit: 5336851
Last Changed Date: 2017-08-16 15:11:19 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: pRolocdata
Version: 1.14.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.14.0.tar.gz
StartedAt: 2017-10-18 11:01:25 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 11:04:02 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 157.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: pRolocdata.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 121.7Mb
  sub-directories of 1Mb or more:
    data     39.3Mb
    extdata  82.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘hyperLOPITU2OS2017’ ‘hyperLOPITU2OS2017b’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
andreyev2010   6.296  0.168   9.283
hyperLOPIT2015 5.272  0.032   5.306
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.


pRolocdata.Rcheck/00install.out:

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

pRolocdata.Rcheck/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.0720.0080.081
andreyev20106.2960.1689.283
andy20110.0800.0040.085
at_chloro0.6480.0000.646
dunkley20060.0280.0000.027
fabre20150.3360.0040.340
foster20060.0320.0000.034
groen20142.5280.0122.542
hall20090.1840.0040.192
havugimana20120.5560.0040.561
hyperLOPIT20155.2720.0325.306
itzhak20160.5960.0040.598
kirkwood20130.0400.0000.043
kristensen20120.0240.0000.024
lopimsSyn20.3200.0080.329
mulvey20154.3000.0164.327
nikolovski20120.4400.0080.451
nikolovski20140.3520.0080.360
pRolocdata0.0120.0160.038
pRolocmetadata0.0160.0040.022
rodriguez2012r10.4480.0320.481
stekhoven20140.3440.0120.358
tan20090.0160.0000.016
trotter20100.3080.0040.313