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BioC experimental data: CHECK report for ListerEtAlBSseq on malbec2

This page was generated on 2017-10-18 15:09:43 -0400 (Wed, 18 Oct 2017).

Package 169/314HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ListerEtAlBSseq 1.8.0
Kamal Kishore
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/ListerEtAlBSseq
Branch: RELEASE_3_5
Last Commit: 02f78ed
Last Changed Date: 2017-08-16 14:44:34 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: ListerEtAlBSseq
Version: 1.8.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings ListerEtAlBSseq_1.8.0.tar.gz
StartedAt: 2017-10-18 10:54:01 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:56:28 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 147.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: ListerEtAlBSseq.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings ListerEtAlBSseq_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/ListerEtAlBSseq.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ListerEtAlBSseq/DESCRIPTION’ ... OK
* this is package ‘ListerEtAlBSseq’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ListerEtAlBSseq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 659.0Mb
  sub-directories of 1Mb or more:
    data       2.9Mb
    extdata  656.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘ListerEtAlBSseq.rnw’
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/ListerEtAlBSseq.Rcheck/00check.log’
for details.


ListerEtAlBSseq.Rcheck/00install.out:

* installing *source* package ‘ListerEtAlBSseq’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ListerEtAlBSseq)

ListerEtAlBSseq.Rcheck/ListerEtAlBSseq-Ex.timings:

nameusersystemelapsed
H1.WGBS0.4800.0040.520
IMR90.WGBS0.5200.0120.532