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BioC experimental data: CHECK report for GSBenchMark on malbec2

This page was generated on 2017-10-18 15:09:42 -0400 (Wed, 18 Oct 2017).

Package 124/314HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSBenchMark 0.110.0
Bahman Afsari
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/GSBenchMark
Branch: RELEASE_3_5
Last Commit: 27b6c03
Last Changed Date: 2017-08-16 15:08:30 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: GSBenchMark
Version: 0.110.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings GSBenchMark_0.110.0.tar.gz
StartedAt: 2017-10-18 10:49:00 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:49:21 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 21.5 seconds
RetCode: 0
Status:  OK 
CheckDir: GSBenchMark.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings GSBenchMark_0.110.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘0.110.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.


GSBenchMark.Rcheck/00install.out:

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

GSBenchMark.Rcheck/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.3080.0280.335
bipolar_GDS21900.2600.0040.261
breast_GDS8070.2200.0000.219
diracpathways0.0120.0000.013
exprsdata0.3840.0240.409
leukemia_GSEA0.2480.0000.246
logexprsdata0.40.00.4
marfan_GDS29600.1120.0040.113
melanoma_GDS27350.3200.0000.322
parkinsons_GDS25190.5160.0200.536
phenotypes0.3800.0000.379
prostate_GDS2545_m_nf0.2000.0000.201
prostate_GDS2545_m_p0.3840.0040.386
prostate_GDS2545_p_nf0.3400.0000.342
sarcoma_data0.5920.0120.604
squamous_GDS25200.2320.0000.230