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BioC experimental data: CHECK report for geneLenDataBase on malbec2

This page was generated on 2017-08-15 15:07:47 -0400 (Tue, 15 Aug 2017).

Package 117/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.12.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/geneLenDataBase
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.12.0.tar.gz
StartedAt: 2017-08-15 10:44:43 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:49:52 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 309.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 0.408  0.008   9.058
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0960.0040.103
anoCar1.genscan.LENGTH0.0640.0240.087
anoCar1.xenoRefGene.LENGTH1.3160.0041.322
anoGam1.ensGene.LENGTH0.0720.0120.085
anoGam1.geneid.LENGTH0.0520.0160.071
anoGam1.genscan.LENGTH0.0440.0160.058
apiMel1.genscan.LENGTH0.0360.0160.049
apiMel2.ensGene.LENGTH0.0960.0120.107
apiMel2.geneid.LENGTH0.0560.0160.073
apiMel2.genscan.LENGTH0.0440.0040.048
aplCal1.xenoRefGene.LENGTH0.4880.0040.491
bosTau2.geneSymbol.LENGTH0.0960.0120.105
bosTau2.geneid.LENGTH0.3520.0040.358
bosTau2.genscan.LENGTH0.0920.0000.094
bosTau2.refGene.LENGTH0.0440.0120.056
bosTau2.sgpGene.LENGTH0.1080.0000.109
bosTau3.ensGene.LENGTH0.1120.0160.130
bosTau3.geneSymbol.LENGTH0.0440.0040.050
bosTau3.geneid.LENGTH0.1120.0040.117
bosTau3.genscan.LENGTH0.0760.0000.080
bosTau3.refGene.LENGTH0.0400.0120.052
bosTau3.sgpGene.LENGTH0.0960.0160.114
bosTau4.ensGene.LENGTH0.1680.0160.186
bosTau4.geneSymbol.LENGTH0.0400.0120.049
bosTau4.genscan.LENGTH0.0680.0040.074
bosTau4.nscanGene.LENGTH0.0400.0040.044
bosTau4.refGene.LENGTH0.0360.0120.050
braFlo1.xenoRefGene.LENGTH0.4800.0000.478
caeJap1.xenoRefGene.LENGTH0.4760.0000.475
caePb1.xenoRefGene.LENGTH0.5280.0000.528
caePb2.xenoRefGene.LENGTH0.4960.0040.499
caeRem2.xenoRefGene.LENGTH0.4520.0000.451
caeRem3.xenoRefGene.LENGTH0.4400.0040.443
calJac1.genscan.LENGTH0.0880.0200.108
calJac1.nscanGene.LENGTH0.1080.0000.108
calJac1.xenoRefGene.LENGTH0.9120.0000.911
canFam1.ensGene.LENGTH0.1160.0040.120
canFam1.geneSymbol.LENGTH0.0040.0040.008
canFam1.genscan.LENGTH0.0680.0000.068
canFam1.nscanGene.LENGTH0.0640.0000.065
canFam1.refGene.LENGTH0.0080.0000.007
canFam1.xenoRefGene.LENGTH1.1640.0001.167
canFam2.ensGene.LENGTH0.1320.0120.146
canFam2.geneSymbol.LENGTH0.0040.0040.008
canFam2.genscan.LENGTH0.0640.0040.065
canFam2.nscanGene.LENGTH0.0680.0040.071
canFam2.refGene.LENGTH0.0040.0040.007
canFam2.xenoRefGene.LENGTH0.5880.0040.590
cavPor3.ensGene.LENGTH0.0880.0040.095
cavPor3.genscan.LENGTH0.0880.0000.092
cavPor3.nscanGene.LENGTH0.0640.0000.067
cavPor3.xenoRefGene.LENGTH0.6200.0040.625
cb1.xenoRefGene.LENGTH0.4800.0080.490
cb3.xenoRefGene.LENGTH0.3240.0000.327
ce2.geneSymbol.LENGTH0.0720.0320.103
ce2.geneid.LENGTH0.0640.0000.063
ce2.refGene.LENGTH0.0680.0320.101
ce4.geneSymbol.LENGTH0.0680.0320.104
ce4.refGene.LENGTH0.0760.0240.102
ce4.xenoRefGene.LENGTH0.1000.0000.099
ce6.ensGene.LENGTH0.1080.0080.116
ce6.geneSymbol.LENGTH0.0760.0280.101
ce6.refGene.LENGTH0.0760.0240.101
ce6.xenoRefGene.LENGTH0.0800.0040.083
ci1.geneSymbol.LENGTH0.0040.0040.006
ci1.refGene.LENGTH0.0040.0040.006
ci1.xenoRefGene.LENGTH0.2080.0000.209
ci2.ensGene.LENGTH0.0720.0000.072
ci2.geneSymbol.LENGTH0.0040.0000.007
ci2.refGene.LENGTH0.0040.0000.007
ci2.xenoRefGene.LENGTH0.3520.0000.350
danRer3.ensGene.LENGTH0.1440.0040.147
danRer3.geneSymbol.LENGTH0.0760.0120.087
danRer3.refGene.LENGTH0.0600.0160.078
danRer4.ensGene.LENGTH0.1520.0000.154
danRer4.geneSymbol.LENGTH0.0800.0160.096
danRer4.genscan.LENGTH0.0720.0000.069
danRer4.nscanGene.LENGTH0.1080.0040.113
danRer4.refGene.LENGTH0.0560.0240.082
danRer5.ensGene.LENGTH0.1640.0040.171
danRer5.geneSymbol.LENGTH0.0640.0120.078
danRer5.refGene.LENGTH0.0520.0200.074
danRer5.vegaGene.LENGTH0.1920.0040.194
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1440.0120.157
danRer6.geneSymbol.LENGTH0.0560.0200.075
danRer6.refGene.LENGTH0.0560.0160.073
danRer6.xenoRefGene.LENGTH0.6040.0000.607
dm1.geneSymbol.LENGTH0.0800.0160.098
dm1.genscan.LENGTH0.0320.0080.039
dm1.refGene.LENGTH0.0680.0280.094
dm2.geneSymbol.LENGTH0.0960.0120.108
dm2.geneid.LENGTH0.1200.0360.154
dm2.genscan.LENGTH0.0240.0120.038
dm2.nscanGene.LENGTH0.0520.0000.053
dm2.refGene.LENGTH0.0760.0240.100
dm3.geneSymbol.LENGTH0.0720.0040.076
dm3.nscanPasaGene.LENGTH0.1440.0200.163
dm3.refGene.LENGTH0.0720.0000.072
dp2.genscan.LENGTH0.0440.0000.045
dp2.xenoRefGene.LENGTH0.2240.0000.224
dp3.geneid.LENGTH0.0520.0120.064
dp3.genscan.LENGTH0.0320.0080.039
dp3.xenoRefGene.LENGTH0.1320.0080.141
droAna1.geneid.LENGTH0.0720.0040.075
droAna1.genscan.LENGTH0.0240.0000.023
droAna1.xenoRefGene.LENGTH0.2120.0040.216
droAna2.genscan.LENGTH0.2080.0000.208
droAna2.xenoRefGene.LENGTH0.3080.0040.313
droEre1.genscan.LENGTH0.0280.0120.040
droEre1.xenoRefGene.LENGTH0.260.000.26
droGri1.genscan.LENGTH0.0360.0200.057
droGri1.xenoRefGene.LENGTH0.3120.0000.313
droMoj1.geneid.LENGTH0.6920.0080.699
droMoj1.genscan.LENGTH0.0520.0000.052
droMoj1.xenoRefGene.LENGTH0.2160.0120.231
droMoj2.genscan.LENGTH0.0320.0160.050
droMoj2.xenoRefGene.LENGTH0.3040.0000.304
droPer1.genscan.LENGTH0.0560.0000.055
droPer1.xenoRefGene.LENGTH0.2840.0120.294
droSec1.genscan.LENGTH0.0400.0040.043
droSec1.xenoRefGene.LENGTH0.2920.0040.297
droSim1.geneid.LENGTH0.0520.0080.060
droSim1.genscan.LENGTH0.0320.0040.035
droSim1.xenoRefGene.LENGTH0.2680.0000.270
droVir1.geneid.LENGTH0.1040.0000.106
droVir1.genscan.LENGTH0.1200.0160.133
droVir1.xenoRefGene.LENGTH0.2720.0040.278
droVir2.genscan.LENGTH0.0360.0160.052
droVir2.xenoRefGene.LENGTH0.3080.0000.307
droYak1.geneid.LENGTH0.0640.0080.069
droYak1.genscan.LENGTH0.0400.0040.044
droYak1.xenoRefGene.LENGTH0.2400.0000.238
droYak2.genscan.LENGTH0.0320.0080.041
droYak2.xenoRefGene.LENGTH0.3080.0000.306
equCab1.geneSymbol.LENGTH0.0080.0000.006
equCab1.geneid.LENGTH0.0840.0080.094
equCab1.nscanGene.LENGTH0.0400.0160.057
equCab1.refGene.LENGTH0.0080.0000.006
equCab1.sgpGene.LENGTH0.0680.0040.073
equCab2.ensGene.LENGTH0.2000.0080.207
equCab2.geneSymbol.LENGTH0.0080.0040.010
equCab2.nscanGene.LENGTH0.0520.0240.078
equCab2.refGene.LENGTH0.0120.0000.009
equCab2.xenoRefGene.LENGTH0.660.000.66
felCat3.ensGene.LENGTH0.1240.0000.125
felCat3.geneSymbol.LENGTH0.0080.0000.005
felCat3.geneid.LENGTH1.2720.0001.272
felCat3.genscan.LENGTH0.1120.0080.120
felCat3.nscanGene.LENGTH0.0920.0120.103
felCat3.refGene.LENGTH0.0040.0000.004
felCat3.sgpGene.LENGTH0.1480.0000.147
felCat3.xenoRefGene.LENGTH1.3000.0081.309
fr1.ensGene.LENGTH0.0720.0160.091
fr1.genscan.LENGTH0.0560.0040.060
fr2.ensGene.LENGTH0.1560.0040.162
galGal2.ensGene.LENGTH0.1720.0040.178
galGal2.geneSymbol.LENGTH0.0160.0080.023
galGal2.geneid.LENGTH0.0440.0160.058
galGal2.genscan.LENGTH0.0640.0120.076
galGal2.refGene.LENGTH0.0200.0040.023
galGal2.sgpGene.LENGTH0.0600.0120.073
galGal3.ensGene.LENGTH0.0760.0080.084
galGal3.geneSymbol.LENGTH0.0080.0120.024
galGal3.genscan.LENGTH0.0480.0240.073
galGal3.nscanGene.LENGTH0.0640.0040.069
galGal3.refGene.LENGTH0.0240.0000.021
galGal3.xenoRefGene.LENGTH0.6080.0000.609
gasAcu1.ensGene.LENGTH0.1200.0080.130
gasAcu1.nscanGene.LENGTH0.1080.0080.118
hg16.acembly.LENGTH0.5200.0000.516
hg16.ensGene.LENGTH0.0880.0040.095
hg16.exoniphy.LENGTH0.5400.0000.544
hg16.geneSymbol.LENGTH0.1240.0040.127
hg16.geneid.LENGTH0.0600.0160.075
hg16.genscan.LENGTH0.0640.0080.070
hg16.knownGene.LENGTH0.1400.0080.149
hg16.refGene.LENGTH0.1040.0040.106
hg16.sgpGene.LENGTH0.0600.0000.062
hg17.acembly.LENGTH1.1120.0001.112
hg17.acescan.LENGTH0.0080.0040.013
hg17.ccdsGene.LENGTH0.0200.0120.031
hg17.ensGene.LENGTH0.1320.0120.142
hg17.exoniphy.LENGTH0.3760.0000.376
hg17.geneSymbol.LENGTH0.1040.0040.110
hg17.geneid.LENGTH0.0760.0040.080
hg17.genscan.LENGTH0.0600.0080.070
hg17.knownGene.LENGTH0.1280.0080.136
hg17.refGene.LENGTH0.1080.0000.111
hg17.sgpGene.LENGTH0.0640.0120.077
hg17.vegaGene.LENGTH0.0400.0160.057
hg17.vegaPseudoGene.LENGTH0.0200.0040.024
hg17.xenoRefGene.LENGTH0.2600.0000.261
hg18.acembly.LENGTH0.5560.0000.556
hg18.acescan.LENGTH0.0080.0040.015
hg18.ccdsGene.LENGTH0.0480.0040.050
hg18.ensGene.LENGTH0.2440.0040.248
hg18.exoniphy.LENGTH0.5880.0000.586
hg18.geneSymbol.LENGTH0.1120.0120.126
hg18.geneid.LENGTH0.1040.0000.105
hg18.genscan.LENGTH0.0680.0040.070
hg18.knownGene.LENGTH0.1600.0080.169
hg18.knownGeneOld3.LENGTH0.0760.0120.087
hg18.refGene.LENGTH0.1040.0120.117
hg18.sgpGene.LENGTH0.0840.0120.097
hg18.sibGene.LENGTH0.5040.0000.505
hg18.xenoRefGene.LENGTH0.4400.0000.441
hg19.ccdsGene.LENGTH0.0520.0080.060
hg19.ensGene.LENGTH0.6680.0000.669
hg19.exoniphy.LENGTH0.4560.0040.461
hg19.geneSymbol.LENGTH0.1280.0080.139
hg19.knownGene.LENGTH0.1840.0200.204
hg19.nscanGene.LENGTH0.4160.0320.450
hg19.refGene.LENGTH0.3360.0040.337
hg19.xenoRefGene.LENGTH0.440.000.44
loxAfr3.xenoRefGene.LENGTH1.5240.0001.526
mm7.ensGene.LENGTH0.1080.0000.105
mm7.geneSymbol.LENGTH0.0840.0000.087
mm7.geneid.LENGTH0.0640.0120.079
mm7.genscan.LENGTH0.0600.0000.062
mm7.knownGene.LENGTH0.0800.0000.077
mm7.refGene.LENGTH0.0640.0040.067
mm7.sgpGene.LENGTH0.0760.0040.081
mm7.xenoRefGene.LENGTH0.3040.0000.303
mm8.ccdsGene.LENGTH0.0200.0120.032
mm8.ensGene.LENGTH0.0760.0080.080
mm8.geneSymbol.LENGTH0.0760.0000.078
mm8.geneid.LENGTH0.0680.0120.082
mm8.genscan.LENGTH0.0600.0000.059
mm8.knownGene.LENGTH0.120.000.12
mm8.nscanGene.LENGTH0.0760.0000.077
mm8.refGene.LENGTH0.0960.0000.096
mm8.sgpGene.LENGTH0.0800.0120.100
mm8.sibGene.LENGTH0.3680.0000.368
mm8.xenoRefGene.LENGTH0.3680.0160.386
mm9.acembly.LENGTH0.3440.0000.347
mm9.ccdsGene.LENGTH0.0360.0040.042
mm9.ensGene.LENGTH0.1920.0120.202
mm9.exoniphy.LENGTH0.6720.0000.674
mm9.geneSymbol.LENGTH0.1040.0000.105
mm9.geneid.LENGTH0.0840.0160.103
mm9.genscan.LENGTH0.0640.0000.066
mm9.knownGene.LENGTH0.1320.0000.131
mm9.nscanGene.LENGTH0.0600.0000.062
mm9.refGene.LENGTH0.0960.0000.095
mm9.sgpGene.LENGTH0.0880.0040.093
mm9.xenoRefGene.LENGTH0.4520.0120.466
monDom1.genscan.LENGTH0.2320.0120.245
monDom4.ensGene.LENGTH0.0720.0120.084
monDom4.geneSymbol.LENGTH0.0040.0000.005
monDom4.genscan.LENGTH0.0640.0160.083
monDom4.nscanGene.LENGTH0.0680.0160.084
monDom4.refGene.LENGTH0.0040.0000.005
monDom4.xenoRefGene.LENGTH0.4360.0000.434
monDom5.ensGene.LENGTH0.1480.0000.146
monDom5.geneSymbol.LENGTH0.0040.0000.006
monDom5.genscan.LENGTH0.0480.0040.055
monDom5.nscanGene.LENGTH0.7840.0000.784
monDom5.refGene.LENGTH0.0000.0040.004
monDom5.xenoRefGene.LENGTH0.5960.0040.603
ornAna1.ensGene.LENGTH0.1080.0080.118
ornAna1.geneSymbol.LENGTH0.0000.0040.004
ornAna1.refGene.LENGTH0.0000.0040.003
ornAna1.xenoRefGene.LENGTH0.5520.0040.554
oryLat2.ensGene.LENGTH0.0800.0040.084
oryLat2.geneSymbol.LENGTH0.0040.0000.005
oryLat2.refGene.LENGTH0.0000.0040.005
oryLat2.xenoRefGene.LENGTH0.5280.0000.529
panTro1.ensGene.LENGTH0.0960.0040.099
panTro1.geneid.LENGTH0.0520.0200.069
panTro1.genscan.LENGTH0.0560.0000.055
panTro1.xenoRefGene.LENGTH0.1160.0040.121
panTro2.ensGene.LENGTH0.1040.0040.107
panTro2.geneSymbol.LENGTH0.0920.0120.106
panTro2.genscan.LENGTH0.0560.0000.058
panTro2.nscanGene.LENGTH0.0560.0000.055
panTro2.refGene.LENGTH0.2120.0000.211
panTro2.xenoRefGene.LENGTH0.5840.0040.590
petMar1.xenoRefGene.LENGTH0.3320.0160.348
ponAbe2.ensGene.LENGTH0.1000.0120.112
ponAbe2.geneSymbol.LENGTH0.0200.0000.018
ponAbe2.genscan.LENGTH0.0600.0000.062
ponAbe2.nscanGene.LENGTH0.060.000.06
ponAbe2.refGene.LENGTH0.0040.0120.016
ponAbe2.xenoRefGene.LENGTH0.8120.0000.814
priPac1.xenoRefGene.LENGTH0.4240.0080.430
rheMac2.ensGene.LENGTH0.2240.0040.229
rheMac2.geneSymbol.LENGTH0.0080.0000.007
rheMac2.geneid.LENGTH0.0720.0040.076
rheMac2.nscanGene.LENGTH0.0560.0000.058
rheMac2.refGene.LENGTH0.0080.0000.007
rheMac2.sgpGene.LENGTH0.0680.0080.077
rheMac2.xenoRefGene.LENGTH0.5960.0080.607
rn3.ensGene.LENGTH0.1280.0040.134
rn3.geneSymbol.LENGTH0.0720.0120.085
rn3.geneid.LENGTH0.0520.0000.053
rn3.genscan.LENGTH0.0600.0040.065
rn3.knownGene.LENGTH0.0280.0080.034
rn3.nscanGene.LENGTH0.0560.0000.057
rn3.refGene.LENGTH0.0640.0160.078
rn3.sgpGene.LENGTH0.0560.0040.060
rn3.xenoRefGene.LENGTH1.2480.0001.248
rn4.ensGene.LENGTH0.1520.0000.153
rn4.geneSymbol.LENGTH0.0560.0160.074
rn4.geneid.LENGTH0.0840.0160.098
rn4.genscan.LENGTH0.0640.0000.065
rn4.knownGene.LENGTH0.0280.0080.036
rn4.nscanGene.LENGTH0.0680.0160.084
rn4.refGene.LENGTH0.0680.0080.075
rn4.sgpGene.LENGTH0.0880.0080.094
rn4.xenoRefGene.LENGTH0.4160.0000.418
sacCer1.ensGene.LENGTH0.0200.0080.028
sacCer2.ensGene.LENGTH0.0160.0120.031
strPur1.geneSymbol.LENGTH0.0080.0000.009
strPur1.genscan.LENGTH0.0880.0040.091
strPur1.refGene.LENGTH0.0040.0040.009
strPur1.xenoRefGene.LENGTH0.6320.0000.634
strPur2.geneSymbol.LENGTH0.0040.0000.006
strPur2.genscan.LENGTH0.1040.0000.105
strPur2.refGene.LENGTH0.0040.0000.005
strPur2.xenoRefGene.LENGTH0.9320.0000.932
supportedGeneIDs0.4080.0089.058
supportedGenomes0.1280.0000.741
taeGut1.ensGene.LENGTH0.0840.0000.083
taeGut1.geneSymbol.LENGTH0.0000.0040.003
taeGut1.genscan.LENGTH0.0400.0200.057
taeGut1.nscanGene.LENGTH0.0360.0080.044
taeGut1.refGene.LENGTH0.0040.0000.004
taeGut1.xenoRefGene.LENGTH0.5360.0000.535
tetNig1.ensGene.LENGTH0.0920.0200.110
tetNig1.geneid.LENGTH0.1360.0120.150
tetNig1.genscan.LENGTH0.0640.0080.075
tetNig1.nscanGene.LENGTH0.0720.0080.082
tetNig2.ensGene.LENGTH0.0800.0040.087
unfactor0.0040.0000.005
xenTro1.genscan.LENGTH0.0920.0000.092
xenTro2.ensGene.LENGTH0.1040.0160.118
xenTro2.geneSymbol.LENGTH0.0400.0080.048
xenTro2.genscan.LENGTH0.0840.0080.090
xenTro2.refGene.LENGTH0.0360.0080.044