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BioC experimental data: BUILD report for curatedBladderData on malbec2

This page was generated on 2017-08-15 15:07:53 -0400 (Tue, 15 Aug 2017).

Package 64/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
curatedBladderData 1.12.0
Markus Riester
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/curatedBladderData
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: curatedBladderData
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedBladderData
StartedAt: 2017-08-15 10:09:07 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:09:52 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 45.4 seconds
RetCode: 0
Status:  OK 
PackageFile: curatedBladderData_1.12.0.tar.gz
PackageFileSize: 74.88 MiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedBladderData
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* checking for file ‘curatedBladderData/DESCRIPTION’ ... OK
* preparing ‘curatedBladderData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...

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 []  \T1/zi4/m/n/10 Experimenter name: Kim WJ, Kim EJ, Kim SK, Kim YJ et al. Pr
edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM. 
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[] 
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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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 []  \T1/zi4/m/n/10 Experimenter name: Urquidi V, Goodison S, Cai Y, Sun Y et a
l. A candidate molecular biomarker panel for the detection of bladder cancer. C
ancer Epidemiol Biomarkers Prev 2012 Dec;21(12):2149-58.[] 

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 []  \T1/zi4/m/n/10 Title: A candidate molecular biomarker panel for the detect
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 []  \T1/zi4/m/n/10 Experimenter name: Riester M, Taylor JM, Feifer A, Koppie T
 et al. Combination of a novel gene expression signature with a clinical nomogr
am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
 Res 2012 Mar 1;18(5):1323-33.[] 

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h a clinical nomogram improves the prediction of survival in high-risk bladder 
cancer.[] 
[14] [15]
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et al. A molecular taxonomy for urothelial carcinoma. Clin Cancer Res 2012 Jun 
15;18(12):3377-86.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Smith SC, Baras AS, Owens CR, Dancik G e
t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[] 

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low-ing
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 []  \T1/zi4/m/n/10 Experimenter name: Als AB, Dyrskj?t L, von der Maase H, Koe
d K et al. Emmprin and survivin predict response and survival following cisplat
in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[] 

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ncer.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Dyrskj?t L, Thykjaer T, Kruh?ffer M, Jen
sen JL et al. Identifying distinct classes of bladder carcinoma using microarra
ys. Nat Genet 2003 Jan;33(1):90-6.[] 
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 []  \T1/zi4/m/n/10 Experimenter name: Stransky N, Vallot C, Reyal F, Bernard-P
ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
 12.[] 

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ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
 12.[] 

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 []  \T1/zi4/m/n/10 Experimenter name: Kim WJ, Kim EJ, Kim SK, Kim YJ et al. Pr
edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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 []  \T1/zi4/m/n/10 Title: Predictive value of progression-related gene classif
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 []  \T1/zi4/m/n/10 Experimenter name: Blaveri E, Simko JP, Korkola JE, Brewer 
JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM. 
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[] 
[5] [6]
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?dahl G et al. Combined gene expression and genomic profiling define two intrin
sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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 []  \T1/zi4/m/n/10 Experimenter name: Lindgren D, Frigyesi A, Gudjonsson S, Sj
?dahl G et al. Combined gene expression and genomic profiling define two intrin
sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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 []  \T1/zi4/m/n/10 Experimenter name: Urquidi V, Goodison S, Cai Y, Sun Y et a
l. A candidate molecular biomarker panel for the detection of bladder cancer. C
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edictive value of progression-related gene classifier in primary non-muscle inv
asive bladder cancer. Mol Cancer 2010 Jan 8;9:3.[] 

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 []  \T1/zi4/m/n/10 Experimenter name: Blaveri E, Simko JP, Korkola JE, Brewer 
JL, Baehner F, Mehta K, Devries S, Koppie T, Pejavar S, Carroll P, Waldman FM. 
Bladder cancer outcome and subtype classification by gene expression.Clin Cance
r Res. 2005 Jun 1;11(11):4044-55.[] 
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?dahl G et al. Combined gene expression and genomic profiling define two intrin
sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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sic molecular subtypes of urothelial carcinoma and gene signatures for molecula
r grading and outcome. Cancer Res 2010 May 1;70(9):3463-72[] 

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l. A candidate molecular biomarker panel for the detection of bladder cancer. C
ancer Epidemiol Biomarkers Prev 2012 Dec;21(12):2149-58.[] 

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 et al. Combination of a novel gene expression signature with a clinical nomogr
am improves the prediction of survival in high-risk bladder cancer. Clin Cancer
 Res 2012 Mar 1;18(5):1323-33.[] 

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cancer.[] 
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et al. A molecular taxonomy for urothelial carcinoma. Clin Cancer Res 2012 Jun 
15;18(12):3377-86.[] 
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t al. Transcriptional signatures of Ral GTPase are associated with aggressive c
linicopathologic characteristics in human cancer. Cancer Res 2012 Jul 15;72(14)
:3480-91.[] 

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d K et al. Emmprin and survivin predict response and survival following cisplat
in-containing chemotherapy in patients with advanced bladder cancer. Clin Cance
r Res 2007 Aug 1;13(15 Pt 1):4407-14.[] 

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sen JL et al. Identifying distinct classes of bladder carcinoma using microarra
ys. Nat Genet 2003 Jan;33(1):90-6.[] 
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ierrot I, de Medina SG, Segraves R, de Rycke Y, Elvin P, Cassidy A, Spraggon C,
 Graham A, Southgate J, Asselain B, Allory Y, Abbou CC, Albertson DG, Thiery JP
, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
 12.[] 

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, Chopin DK, Pinkel D, Radvanyi F. Regional copy number-independent deregulatio
n of transcription in cancer. Nat Genet. 2006 Dec;38(12):1386-96. Epub 2006 Nov
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