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BioC experimental data: CHECK report for NCIgraphData on malbec2

This page was generated on 2017-08-15 15:07:48 -0400 (Tue, 15 Aug 2017).

Package 207/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NCIgraphData 1.12.0
Laurent Jacob
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/NCIgraphData
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: NCIgraphData
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings NCIgraphData_1.12.0.tar.gz
StartedAt: 2017-08-15 10:56:04 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:57:27 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 83.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: NCIgraphData.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings NCIgraphData_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/NCIgraphData.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘NCIgraphData/DESCRIPTION’ ... OK
* this is package ‘NCIgraphData’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NCIgraphData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    data   5.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                        old_size new_size compress
  NCI-cyList.RData         4.3Mb    2.0Mb       xz
  reactome-cyList.RData    1.1Mb    558Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/NCIgraphData.Rcheck/00check.log’
for details.


NCIgraphData.Rcheck/00install.out:

* installing *source* package ‘NCIgraphData’ ...
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (NCIgraphData)

NCIgraphData.Rcheck/NCIgraphData-Ex.timings:

nameusersystemelapsed
NCI.cyList2.9520.1163.097
reactome.cyList0.4720.0320.504