Back to the "Build/check report"

BioC experimental data: CHECK report for DMRcatedata on malbec2

This page was generated on 2017-08-15 15:07:54 -0400 (Tue, 15 Aug 2017).

Package 77/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DMRcatedata 1.12.0
Tim Peters
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/DMRcatedata
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: DMRcatedata
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings DMRcatedata_1.12.0.tar.gz
StartedAt: 2017-08-15 10:39:45 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:42:07 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 142.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: DMRcatedata.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings DMRcatedata_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/DMRcatedata.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DMRcatedata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DMRcatedata’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DMRcatedata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 24.2Mb
  sub-directories of 1Mb or more:
    data  24.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  dmrcatedata.rda   24.0Mb   15.5Mb       xz
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
DMRcatedata-package 5.312  0.032   5.347
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/DMRcatedata.Rcheck/00check.log’
for details.


DMRcatedata.Rcheck/00install.out:

* installing *source* package ‘DMRcatedata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DMRcatedata)

DMRcatedata.Rcheck/DMRcatedata-Ex.timings:

nameusersystemelapsed
DMRcatedata-package5.3120.0325.347