Back to the "Build/check report"

BioC experimental data: CHECK report for CardinalWorkflows on malbec2

This page was generated on 2017-08-15 15:07:57 -0400 (Tue, 15 Aug 2017).

Package 35/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CardinalWorkflows 1.8.0
Kylie A. Bemis
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/CardinalWorkflows
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CardinalWorkflows
Version: 1.8.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings CardinalWorkflows_1.8.0.tar.gz
StartedAt: 2017-08-15 10:32:05 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:33:28 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 83.3 seconds
RetCode: 0
Status:  OK 
CheckDir: CardinalWorkflows.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings CardinalWorkflows_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/CardinalWorkflows.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CardinalWorkflows/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CardinalWorkflows’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CardinalWorkflows’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 140.8Mb
  sub-directories of 1Mb or more:
    data  134.9Mb
    doc     5.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
rcc-data      7.644  2.088   9.751
cardinal-data 7.088  0.724   7.815
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log’
for details.


CardinalWorkflows.Rcheck/00install.out:

* installing *source* package ‘CardinalWorkflows’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CardinalWorkflows)

CardinalWorkflows.Rcheck/CardinalWorkflows-Ex.timings:

nameusersystemelapsed
cardinal-data7.0880.7247.815
pig206-data3.8000.1603.961
rcc-data7.6442.0889.751