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###
### Running command:
###
### rm -rf affxparser.buildbin-libdir && mkdir affxparser.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/affxparser_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=affxparser.buildbin-libdir --merge-multiarch affxparser_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL affxparser_1.48.0.zip && rm affxparser_1.48.0.tar.gz affxparser_1.48.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 876k 1 14357 0 0 22520 0 0:00:39 --:--:-- 0:00:39 22573
100 876k 100 876k 0 0 1137k 0 --:--:-- --:--:-- --:--:-- 1140k
install for i386
* installing *source* package 'affxparser' ...
** libs
rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/DataSet.h:25,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:25,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusion_sdk/calvin_files/data/src/CHPTilingData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_sdk/calvin_files/data/src/ColumnInfo.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/DataSet.h:25,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/CDFFileData.h:37,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/parameter/src/ParameterException.h:24,
from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:27,
from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/parsers/src/FileInput.h:27,
from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/utils/src/checksum.h:27,
from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Fs.h:27,
from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/BPMAPFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/BPMAPFileData.h:30,
from fusion_sdk/file/BPMAPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/BPMAPFileWriter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/BPMAPFileData.h:30,
from fusion_sdk/file/BPMAPFileWriter.h:26,
from fusion_sdk/file/BPMAPFileWriter.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/CDFFileData.h:37,
from fusion_sdk/file/CDFFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/file/CDFFileData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/CHPFileData.h:36,
from fusion_sdk/file/CHPFileData.cpp:20:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/file/TagValuePair.h:27,
from fusion_sdk/file/CHPFileData.h:34,
from fusion_sdk/file/CHPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/FileIO.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/FileIO.cpp:23:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/FileWriter.h:26,
from fusion_sdk/file/FileWriter.cpp:25:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/FileWriter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/ClfFile.cpp -o fusion_sdk/file/TsvFile/ClfFile.o
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
from fusion_sdk/file/TsvFile/ClfFile.cpp:27:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/PgfFile.cpp -o fusion_sdk/file/TsvFile/PgfFile.o
In file included from fusion_sdk/file/TsvFile/PgfFile.h:32:0,
from fusion_sdk/file/TsvFile/PgfFile.cpp:274:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/TsvFile.cpp -o fusion_sdk/file/TsvFile/TsvFile.o
In file included from fusion_sdk/file/TsvFile/TsvFile.cpp:24:0:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxByteArray.cpp -o fusion_sdk/util/AffxByteArray.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/Err.h:34,
from fusion_sdk/util/AffxString.h:29,
from fusion_sdk/util/AffxByteArray.h:29,
from fusion_sdk/util/AffxByteArray.cpp:27:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/AffxConv.h:33,
from fusion_sdk/util/AffxByteArray.h:28,
from fusion_sdk/util/AffxByteArray.cpp:27:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxConv.cpp -o fusion_sdk/util/AffxConv.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/AffxConv.cpp:34:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/AffxConv.h:33,
from fusion_sdk/util/AffxConv.cpp:32:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/MsgStream.cpp -o fusion_sdk/util/MsgStream.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/Err.h:34,
from fusion_sdk/util/MsgStream.cpp:33:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/MsgHandler.h:31,
from fusion_sdk/util/MsgStream.h:32,
from fusion_sdk/util/MsgStream.cpp:31:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Util.cpp -o fusion_sdk/util/Util.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Err.cpp -o fusion_sdk/util/Err.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Fs.cpp -o fusion_sdk/util/Fs.o
fusion_sdk/util/Fs.cpp:43:0: warning: "S_IRUSR" redefined
#define S_IRUSR 00400 //owner has read permission
^
In file included from fusion_sdk/util/Fs.h:33:0,
from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_32/i686-w64-mingw32/include/sys/stat.h:152:0: note: this is the location of the previous definition
#define S_IRUSR _S_IRUSR
^
fusion_sdk/util/Fs.cpp:44:0: warning: "S_IWUSR" redefined
#define S_IWUSR 00200 //owner has write permission
^
In file included from fusion_sdk/util/Fs.h:33:0,
from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_32/i686-w64-mingw32/include/sys/stat.h:151:0: note: this is the location of the previous definition
#define S_IWUSR _S_IWUSR
^
fusion_sdk/util/Fs.cpp:45:0: warning: "S_IXUSR" redefined
#define S_IXUSR 00100 ///owner has execute permission
^
In file included from fusion_sdk/util/Fs.h:33:0,
from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_32/i686-w64-mingw32/include/sys/stat.h:150:0: note: this is the location of the previous definition
#define S_IXUSR _S_IXUSR
^
fusion_sdk/util/Fs.cpp: In static member function 'static AptErr_t Fs::listDir(const string&, std::vector<std::basic_string<char> >&, bool)':
fusion_sdk/util/Fs.cpp:1028:9: warning: unused variable 'rv' [-Wunused-variable]
DWORD rv=0;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Verbose.cpp -o fusion_sdk/util/Verbose.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Fs.h:27,
from fusion_sdk/util/Verbose.cpp:31:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/calvin_files/utils/src/StringUtils.h:27,
from fusion_sdk/util/Verbose.cpp:29:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/RowFile.cpp -o fusion_sdk/util/RowFile.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/RowFile.cpp:30:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/RowFile.h:31,
from fusion_sdk/util/RowFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/TableFile.cpp -o fusion_sdk/util/TableFile.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Util.h:35,
from fusion_sdk/util/TableFile.h:32,
from fusion_sdk/util/TableFile.cpp:28:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/RowFile.h:31,
from fusion_sdk/util/TableFile.h:31,
from fusion_sdk/util/TableFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Convert.cpp -o fusion_sdk/util/Convert.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_cel_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_cdf_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_cdf_extras.cpp:8:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o
In file included from R_affx_bpmap_parser.cpp:4:0:
R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/BPMAPFileData.h:30,
from R_affx_bpmap_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_bpmap_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/file/BPMAPFileData.h:30,
from R_affx_bpmap_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
R_affx_bpmap_parser.cpp: In function 'SEXPREC* R_affx_get_bpmap_file(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
R_affx_bpmap_parser.cpp:482:42: warning: 'centerpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(centerpos)[j] = seqHit.getCenterPosition();
^
R_affx_bpmap_parser.cpp:479:45: warning: 'startpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(startpos)[j] = seqHit.getStartPosition();
^
R_affx_bpmap_parser.cpp:485:44: warning: 'matchscore' may be used uninitialized in this function [-Wmaybe-uninitialized]
REAL(matchscore)[j] = (double)seqHit.MatchScore;
^
R_affx_bpmap_parser.cpp:488:44: warning: 'probelength' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(probelength)[j] = (int)seqHit.ProbeLength;
^
R_affx_bpmap_parser.cpp:467:39: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(strand)[j] = (unsigned int)seqHit.TopStrand;
^
R_affx_bpmap_parser.cpp:475:68: warning: 'probeseq' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_STRING_ELT(probeseq, j, mkChar(cstr));
^
R_affx_bpmap_parser.cpp:502:56: warning: 'mmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(seqObj, kk, mmy);
^
R_affx_bpmap_parser.cpp:463:36: warning: 'mmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(mmx)[j] = seqHit.MMX;
^
R_affx_bpmap_parser.cpp:495:52: warning: 'pmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(seqObj, kk, pmy);
^
R_affx_bpmap_parser.cpp:493:52: warning: 'pmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(seqObj, kk, pmx);
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
from R_affx_clf_pgf_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/portability/affy-base-types.h:56,
from fusion_sdk/file/TsvFile/TsvFile.h:30,
from fusion_sdk/file/TsvFile/ClfFile.h:31,
from R_affx_clf_pgf_parser.cpp:2:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
from R_affx_clf_pgf_parser.cpp:2:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
R_affx_clf_pgf_parser.cpp: In function 'void R_affx_get_body(affx::PgfFile*, SEXP, SEXP)':
R_affx_clf_pgf_parser.cpp:135:35: warning: 'pindices' may be used uninitialized in this function [-Wmaybe-uninitialized]
currIndex = pindices[++i];
^
R_affx_clf_pgf_parser.cpp:132:4: warning: 'currIndex' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (nProbesets < currIndex) continue;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from R_affx_chp_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from R_affx_chp_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
from R_affx_chp_parser.cpp:21:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from R_affx_chp_parser.cpp:1:
C:/Rtools/mingw_32/i686-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
R_affx_chp_parser.cpp: In function 'SEXPREC* R_affx_GetCHPGenotypingResults(affymetrix_fusion_io::FusionCHPLegacyData*)':
R_affx_chp_parser.cpp:389:33: warning: 'nocall' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 7, nocall);
^
R_affx_chp_parser.cpp:388:29: warning: 'bb' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 6, bb);
^
R_affx_chp_parser.cpp:387:29: warning: 'ab' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 5, ab);
^
R_affx_chp_parser.cpp:386:29: warning: 'aa' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 4, aa);
^
R_affx_chp_parser.cpp:383:31: warning: 'ras1' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 5, ras1);
^
R_affx_chp_parser.cpp:360:16: warning: 'ras2' may be used uninitialized in this function [-Wmaybe-uninitialized]
REAL(ras2)[i] = f.GetRAS2();
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o affxparser.dll tmp.def fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o -lws2_32 -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.buildbin-libdir/affxparser/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'affxparser' ...
** libs
rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/DataSet.h:25,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:25,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusion_sdk/calvin_files/data/src/CHPTilingData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_sdk/calvin_files/data/src/ColumnInfo.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataSet.h:28,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/DataSet.h:25,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/CDFFileData.h:37,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25,
from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/parameter/src/ParameterException.h:24,
from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:27,
from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/data/src/CELData.h:26,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/parsers/src/FileInput.h:27,
from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:24:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/parsers/src/FileInput.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/utils/src/checksum.h:27,
from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Fs.h:27,
from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/BPMAPFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/BPMAPFileData.h:30,
from fusion_sdk/file/BPMAPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/BPMAPFileWriter.cpp:22:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/BPMAPFileData.h:30,
from fusion_sdk/file/BPMAPFileWriter.h:26,
from fusion_sdk/file/BPMAPFileWriter.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/CDFFileData.h:37,
from fusion_sdk/file/CDFFileData.cpp:21:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/file/CDFFileData.cpp:21:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/CHPFileData.h:36,
from fusion_sdk/file/CHPFileData.cpp:20:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/file/TagValuePair.h:27,
from fusion_sdk/file/CHPFileData.h:34,
from fusion_sdk/file/CHPFileData.cpp:20:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/FileIO.cpp:26:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/FileIO.cpp:23:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/file/FileIO.h:27,
from fusion_sdk/file/FileWriter.h:26,
from fusion_sdk/file/FileWriter.cpp:25:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/FileWriter.cpp:22:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/ClfFile.cpp -o fusion_sdk/file/TsvFile/ClfFile.o
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
from fusion_sdk/file/TsvFile/ClfFile.cpp:27:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/PgfFile.cpp -o fusion_sdk/file/TsvFile/PgfFile.o
In file included from fusion_sdk/file/TsvFile/PgfFile.h:32:0,
from fusion_sdk/file/TsvFile/PgfFile.cpp:274:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/file/TsvFile/TsvFile.cpp -o fusion_sdk/file/TsvFile/TsvFile.o
In file included from fusion_sdk/file/TsvFile/TsvFile.cpp:24:0:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxByteArray.cpp -o fusion_sdk/util/AffxByteArray.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/Err.h:34,
from fusion_sdk/util/AffxString.h:29,
from fusion_sdk/util/AffxByteArray.h:29,
from fusion_sdk/util/AffxByteArray.cpp:27:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/AffxConv.h:33,
from fusion_sdk/util/AffxByteArray.h:28,
from fusion_sdk/util/AffxByteArray.cpp:27:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/AffxConv.cpp -o fusion_sdk/util/AffxConv.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/AffxConv.cpp:34:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/AffxConv.h:33,
from fusion_sdk/util/AffxConv.cpp:32:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/MsgStream.cpp -o fusion_sdk/util/MsgStream.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/Err.h:34,
from fusion_sdk/util/MsgStream.cpp:33:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/MsgHandler.h:31,
from fusion_sdk/util/MsgStream.h:32,
from fusion_sdk/util/MsgStream.cpp:31:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Util.cpp -o fusion_sdk/util/Util.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Err.cpp -o fusion_sdk/util/Err.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Fs.cpp -o fusion_sdk/util/Fs.o
fusion_sdk/util/Fs.cpp:43:0: warning: "S_IRUSR" redefined
#define S_IRUSR 00400 //owner has read permission
^
In file included from fusion_sdk/util/Fs.h:33:0,
from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/sys/stat.h:152:0: note: this is the location of the previous definition
#define S_IRUSR _S_IRUSR
^
fusion_sdk/util/Fs.cpp:44:0: warning: "S_IWUSR" redefined
#define S_IWUSR 00200 //owner has write permission
^
In file included from fusion_sdk/util/Fs.h:33:0,
from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/sys/stat.h:151:0: note: this is the location of the previous definition
#define S_IWUSR _S_IWUSR
^
fusion_sdk/util/Fs.cpp:45:0: warning: "S_IXUSR" redefined
#define S_IXUSR 00100 ///owner has execute permission
^
In file included from fusion_sdk/util/Fs.h:33:0,
from fusion_sdk/util/Fs.cpp:28:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/sys/stat.h:150:0: note: this is the location of the previous definition
#define S_IXUSR _S_IXUSR
^
fusion_sdk/util/Fs.cpp: In static member function 'static AptErr_t Fs::listDir(const string&, std::vector<std::basic_string<char> >&, bool)':
fusion_sdk/util/Fs.cpp:1028:9: warning: unused variable 'rv' [-Wunused-variable]
DWORD rv=0;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Verbose.cpp -o fusion_sdk/util/Verbose.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Fs.h:27,
from fusion_sdk/util/Verbose.cpp:31:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/calvin_files/utils/src/StringUtils.h:27,
from fusion_sdk/util/Verbose.cpp:29:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/RowFile.cpp -o fusion_sdk/util/RowFile.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Convert.h:32,
from fusion_sdk/util/RowFile.cpp:30:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/RowFile.h:31,
from fusion_sdk/util/RowFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/TableFile.cpp -o fusion_sdk/util/TableFile.o
In file included from fusion_sdk/portability/affy-base-types.h:51:0,
from fusion_sdk/util/Util.h:35,
from fusion_sdk/util/TableFile.h:32,
from fusion_sdk/util/TableFile.cpp:28:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/crtdefs.h:10,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/string.h:9,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/cstring:42,
from fusion_sdk/util/RowFile.h:31,
from fusion_sdk/util/TableFile.h:31,
from fusion_sdk/util/TableFile.cpp:28:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c fusion_sdk/util/Convert.cpp -o fusion_sdk/util/Convert.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_cel_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_cdf_parser.cpp:9:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/DataGroup.h:31,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_cdf_extras.cpp:8:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:28,
from fusion_sdk/calvin_files/data/src/CDFData.h:26,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o
In file included from R_affx_bpmap_parser.cpp:4:0:
R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/file/BPMAPFileData.h:30,
from R_affx_bpmap_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R.h:91:0,
from R_affx_bpmap_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/file/BPMAPFileData.h:30,
from R_affx_bpmap_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
R_affx_bpmap_parser.cpp: In function 'SEXPREC* R_affx_get_bpmap_file(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
R_affx_bpmap_parser.cpp:482:42: warning: 'centerpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(centerpos)[j] = seqHit.getCenterPosition();
^
R_affx_bpmap_parser.cpp:479:45: warning: 'startpos' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(startpos)[j] = seqHit.getStartPosition();
^
R_affx_bpmap_parser.cpp:485:44: warning: 'matchscore' may be used uninitialized in this function [-Wmaybe-uninitialized]
REAL(matchscore)[j] = (double)seqHit.MatchScore;
^
R_affx_bpmap_parser.cpp:488:44: warning: 'probelength' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(probelength)[j] = (int)seqHit.ProbeLength;
^
R_affx_bpmap_parser.cpp:467:39: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(strand)[j] = (unsigned int)seqHit.TopStrand;
^
R_affx_bpmap_parser.cpp:475:68: warning: 'probeseq' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_STRING_ELT(probeseq, j, mkChar(cstr));
^
R_affx_bpmap_parser.cpp:502:56: warning: 'mmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(seqObj, kk, mmy);
^
R_affx_bpmap_parser.cpp:463:36: warning: 'mmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
INTEGER(mmx)[j] = seqHit.MMX;
^
R_affx_bpmap_parser.cpp:495:52: warning: 'pmy' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(seqObj, kk, pmy);
^
R_affx_bpmap_parser.cpp:493:52: warning: 'pmx' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_VECTOR_ELT(seqObj, kk, pmx);
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
from R_affx_clf_pgf_parser.cpp:11:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/portability/affy-base-types.h:56,
from fusion_sdk/file/TsvFile/TsvFile.h:30,
from fusion_sdk/file/TsvFile/ClfFile.h:31,
from R_affx_clf_pgf_parser.cpp:2:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:0,
from R_affx_clf_pgf_parser.cpp:2:
fusion_sdk/file/TsvFile/TsvFile.h: In member function 'affx::TsvFile& affx::TsvFile::operator=(const affx::TsvFile&)':
fusion_sdk/file/TsvFile/TsvFile.h:527:11: warning: statement has no effect [-Wunused-value]
(that); /* unused var */
^
R_affx_clf_pgf_parser.cpp: In function 'void R_affx_get_body(affx::PgfFile*, SEXP, SEXP)':
R_affx_clf_pgf_parser.cpp:135:35: warning: 'pindices' may be used uninitialized in this function [-Wmaybe-uninitialized]
currIndex = pindices[++i];
^
R_affx_clf_pgf_parser.cpp:132:4: warning: 'currIndex' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (nProbesets < currIndex) continue;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I"C:/local323/include" -O2 -Wall -mtune=core2 -Wno-sign-compare -Wno-unknown-pragmas -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o
In file included from fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h:27:0,
from fusion_sdk/calvin_files/exception/src/ExceptionBase.h:24,
from fusion_sdk/calvin_files/data/src/DataException.h:27,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from R_affx_chp_parser.cpp:1:
./R_affx_constants.h:17:0: warning: "WINVER" redefined
#define WINVER WindowsXP /* for Util.cpp, via TsvFile.cpp */
^
In file included from ./_mingw.h:16:0,
from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:9,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from R_affx_chp_parser.cpp:1:
./_mingw_gcc493.h:225:0: note: this is the location of the previous definition
#define WINVER 0x0502
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/Rdefines.h:37:0,
from R_affx_chp_parser.cpp:21:
C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
#define ERROR ),error(R_problem_buf);}
^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
from fusion_sdk/calvin_files/data/src/GenericData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26,
from R_affx_chp_parser.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
#define ERROR 0
^
R_affx_chp_parser.cpp: In function 'SEXPREC* R_affx_GetCHPGenotypingResults(affymetrix_fusion_io::FusionCHPLegacyData*)':
R_affx_chp_parser.cpp:389:33: warning: 'nocall' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 7, nocall);
^
R_affx_chp_parser.cpp:388:29: warning: 'bb' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 6, bb);
^
R_affx_chp_parser.cpp:387:29: warning: 'ab' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 5, ab);
^
R_affx_chp_parser.cpp:386:29: warning: 'aa' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 4, aa);
^
R_affx_chp_parser.cpp:383:31: warning: 'ras1' may be used uninitialized in this function [-Wmaybe-uninitialized]
SET_ELEMENT(rval, 5, ras1);
^
R_affx_chp_parser.cpp:360:16: warning: 'ras2' may be used uninitialized in this function [-Wmaybe-uninitialized]
REAL(ras2)[i] = f.GetRAS2();
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o affxparser.dll tmp.def fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o -lws2_32 -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/affxparser.buildbin-libdir/affxparser/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affxparser' as affxparser_1.48.0.zip
* DONE (affxparser)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'affxparser' successfully unpacked and MD5 sums checked
