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BioC 3.5: BUILD report for COMPASS on veracruz2

This page was generated on 2017-10-18 14:31:46 -0400 (Wed, 18 Oct 2017).

Package 264/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COMPASS 1.14.0
Greg Finak
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/COMPASS
Branch: RELEASE_3_5
Last Commit: b354120
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: COMPASS
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
StartedAt: 2017-10-17 20:38:54 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 20:39:01 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 7.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
###
##############################################################################
##############################################################################


* checking for file ‘COMPASS/DESCRIPTION’ ... OK
* preparing ‘COMPASS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘COMPASS’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c COMPASS_c.c -o COMPASS_c.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c COMPASS_cpp.cpp -o COMPASS_cpp.o
COMPASS_cpp.cpp:40:35: error: no matching function for call to 'sapply'
      IntegerVector c_combo_abs = sapply(c_combo, ::abs);
                                  ^˜˜˜˜˜
/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/Rcpp/sugar/functions/sapply.h:126:1: note: candidate template ignored: couldn't infer template argument 'Function'
sapply( const Rcpp::VectorBase<RTYPE,NA,T>& t, Function fun ){
^
/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/Rcpp/vector/ListOf.h:134:3: note: candidate template ignored: could not match 'ListOf' against 'Vector'
T sapply(const ListOf<T>& t, Function fun) {
  ^
1 error generated.
make: *** [COMPASS_cpp.o] Error 1
ERROR: compilation failed for package ‘COMPASS’
* removing ‘/private/tmp/Rtmpmvjh4d/Rinstd7624a8b0f53/COMPASS’
      -----------------------------------
ERROR: package installation failed