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BioC 3.5: BUILD BIN report for BiRewire on veracruz2

This page was generated on 2017-10-18 14:31:22 -0400 (Wed, 18 Oct 2017).

Package 139/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.8.1
Andrea Gobbi
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/BiRewire
Branch: RELEASE_3_5
Last Commit: 45b91c3
Last Changed Date: 2017-04-27 10:22:54 -0400 (Thu, 27 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BiRewire
Version: 3.8.1
Command: rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiRewire_3.8.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiRewire.buildbin-libdir
StartedAt: 2017-10-18 10:37:46 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:37:59 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:  OK 
PackageFile: BiRewire_3.8.1.tgz
PackageFileSize: 609.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiRewire_3.8.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiRewire.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BiRewire.buildbin-libdir BiRewire_3.8.1.tar.gz'
>>>>>>> 

* installing *source* package ‘BiRewire’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BiRewire.c -o BiRewire.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c interface.c -o interface.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiRewire)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BiRewire.buildbin-libdir/BiRewire/libs//BiRewire.so"