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BioC 3.5: BUILD report for AtlasRDF on malbec2

This page was generated on 2017-10-18 14:15:38 -0400 (Wed, 18 Oct 2017).

Package 75/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AtlasRDF 1.12.0
Simon Jupp
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/AtlasRDF
Branch: RELEASE_3_5
Last Commit: 098bfe6
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: AtlasRDF
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AtlasRDF
StartedAt: 2017-10-17 19:28:23 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 19:28:28 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 4.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AtlasRDF
###
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* checking for file ‘AtlasRDF/DESCRIPTION’ ... OK
* preparing ‘AtlasRDF’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: SPARQL
Loading required package: XML
Loading required package: RCurl
Loading required package: bitops
An error occured when trying SPARQL query for includeOnlySubclasses function Error: XML content does not seem to be XML: ''

Error in retrieving subclasses of class efo:EFO_0000408

Error: processing vignette 'AtlasRDF_vignette.Rnw' failed with diagnostics:
 chunk 13 
Error : trying to get slot "p.value" from an object of a basic class ("NULL") with no slots
Execution halted