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BioC 3.5: BUILD BIN report for coMET on tokay2

This page was generated on 2017-08-16 13:24:05 -0400 (Wed, 16 Aug 2017).

Package 263/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
coMET 1.8.0
Tiphaine Martin
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/coMET
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: coMET
Version: 1.8.0
Command: cd coMET.buildbin-libdir/coMET && zip -r ../../coMET_1.8.0.zip . & cd ../..
StartedAt: 2017-08-16 04:20:53 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:21:41 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 48.2 seconds
RetCode: 0
Status:  OK  
PackageFile: coMET_1.8.0.zip
PackageFileSize: 29.3 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd coMET.buildbin-libdir/coMET && zip -r ../../coMET_1.8.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (264 bytes security) (deflated 70%)
  adding: data/ (304 bytes security) (stored 0%)
  adding: data/allIG.rda (264 bytes security) (deflated 0%)
  adding: data/allIGtrack.rda (264 bytes security) (deflated 0%)
  adding: data/allimprintedIG.rda (264 bytes security) (deflated 0%)
  adding: data/allimprintedIGtrack.rda (264 bytes security) (deflated 0%)
  adding: data/BindingMotifAll.rda (264 bytes security) (stored 0%)
  adding: data/BindingMotifMultiple.rda (264 bytes security) (stored 0%)
  adding: data/bindingMotifsBiomartAll.rda (264 bytes security) (stored 0%)
  adding: data/bindingMotifsBiomartMultiple.rda (264 bytes security) (stored 0%)
  adding: data/bindingMotifsBiomartSingle.rda (264 bytes security) (stored 0%)
  adding: data/BindingMotifSingle.rda (264 bytes security) (stored 0%)
  adding: data/bindMotifsBiomartTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/bindMotifsBiomartTrackMultiple.rda (264 bytes security) (stored 0%)
  adding: data/bindMotifsBiomartTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/chipTFtrack.rda (264 bytes security) (deflated 3%)
  adding: data/chipTFtrack_old.rda (264 bytes security) (deflated 3%)
  adding: data/chromatinHMMRoadMapAll.rda (264 bytes security) (stored 0%)
  adding: data/chromatinHMMRoadMapMultiple.rda (264 bytes security) (stored 0%)
  adding: data/chromatinHMMRoadMapSingle.rda (264 bytes security) (stored 0%)
  adding: data/chromhmmNoPattern.rda (264 bytes security) (stored 0%)
  adding: data/chromhmmPattern.rda (264 bytes security) (stored 0%)
  adding: data/chromhmmtrackone.rda (264 bytes security) (stored 0%)
  adding: data/chromHMM_RoadMapAll.rda (264 bytes security) (stored 0%)
  adding: data/chromHMM_RoadMapAllE063.rda (264 bytes security) (stored 0%)
  adding: data/chromHMM_RoadMapMultiple.rda (264 bytes security) (stored 0%)
  adding: data/chromHMM_RoadMapSingle.rda (264 bytes security) (stored 0%)
  adding: data/ClinVarCnvTrack.rda (264 bytes security) (stored 0%)
  adding: data/clinVarMaintrack.rda (264 bytes security) (stored 0%)
  adding: data/CoreillCNVTrack.rda (264 bytes security) (stored 0%)
  adding: data/coreilVarianttrack.rda (264 bytes security) (stored 0%)
  adding: data/cosmicVarianttrack.rda (264 bytes security) (stored 0%)
  adding: data/cpgIslandsUCSC.rda (264 bytes security) (stored 0%)
  adding: data/cpgIslandtrack.rda (264 bytes security) (stored 0%)
  adding: data/datalist (264 bytes security) (deflated 75%)
  adding: data/dgfootprints_RoadMapSingle.rda (264 bytes security) (deflated 0%)
  adding: data/DNaseI_RoadMapSingle.rda (264 bytes security) (deflated 0%)
  adding: data/dnasetrack.rda (264 bytes security) (stored 0%)
  adding: data/DupTrack.rda (264 bytes security) (stored 0%)
  adding: data/dyaRM.rda (264 bytes security) (deflated 0%)
  adding: data/dyaRMtrack.rda (264 bytes security) (stored 0%)
  adding: data/eGTexTrackall.rda (264 bytes security) (stored 0%)
  adding: data/eGTexTrackSNP.rda (264 bytes security) (stored 0%)
  adding: data/enhFANTOMtrack.rda (264 bytes security) (deflated 0%)
  adding: data/enhRM.rda (264 bytes security) (deflated 0%)
  adding: data/enhRMtrack.rda (264 bytes security) (deflated 0%)
  adding: data/eQTLAll.rda (264 bytes security) (stored 0%)
  adding: data/eQTLMultiple.rda (264 bytes security) (stored 0%)
  adding: data/eQTLSingle.rda (264 bytes security) (stored 0%)
  adding: data/eQTLTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/eQTLTrackMultiple.rda (264 bytes security) (stored 0%)
  adding: data/eQTLTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/gadtrack.rda (264 bytes security) (stored 0%)
  adding: data/gcContent.rda (264 bytes security) (deflated 12%)
  adding: data/gctrack.rda (264 bytes security) (deflated 12%)
  adding: data/geneENSEMBLtrack.rda (264 bytes security) (deflated 0%)
  adding: data/geneNameEnsembl.rda (264 bytes security) (stored 0%)
  adding: data/GeneReviewsTrack.rda (264 bytes security) (stored 0%)
  adding: data/GeneReviewTrack.rda (264 bytes security) (stored 0%)
  adding: data/genesENSEMBL.rda (264 bytes security) (deflated 0%)
  adding: data/genesGencodetrack.rda (264 bytes security) (deflated 0%)
  adding: data/genesNameENSEMBL.rda (264 bytes security) (stored 0%)
  adding: data/genesUcsctrack.rda (264 bytes security) (stored 0%)
  adding: data/genetrack4psiGTEX.rda (264 bytes security) (deflated 0%)
  adding: data/genetrack4RM.rda (264 bytes security) (deflated 0%)
  adding: data/grtrack4eGTex.rda (264 bytes security) (deflated 0%)
  adding: data/GWASTrack.rda (264 bytes security) (stored 0%)
  adding: data/histonalltrack.rda (264 bytes security) (deflated 3%)
  adding: data/histoneonetrack.rda (264 bytes security) (stored 0%)
  adding: data/imprintedGenesGTEx.rda (264 bytes security) (stored 0%)
  adding: data/interestGenesENSEMBL.rda (264 bytes security) (deflated 0%)
  adding: data/interestgenesENSMBLtrack.rda (264 bytes security) (deflated 0%)
  adding: data/interestTranscriptENSEMBL.rda (264 bytes security) (deflated 0%)
  adding: data/interesttransENSMBLtrack.rda (264 bytes security) (deflated 0%)
  adding: data/ISCAtrack.rda (264 bytes security) (stored 0%)
  adding: data/ISCAtrack_Grch38.rda (264 bytes security) (stored 0%)
  adding: data/knownGenesUCSC.rda (264 bytes security) (stored 0%)
  adding: data/matrix_HiC_Rao.rda (264 bytes security) (stored 0%)
  adding: data/metQTLSingle.rda (264 bytes security) (stored 0%)
  adding: data/metQTLTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/metQTLTrackMultiple.rda (264 bytes security) (stored 0%)
  adding: data/metQTLTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/miRNATargetRegionsBiomart.rda (264 bytes security) (stored 0%)
  adding: data/miRNATargetRegionsBiomartTrack.rda (264 bytes security) (stored 0%)
  adding: data/OtherRegulatoryRegionsAll.rda (264 bytes security) (stored 0%)
  adding: data/OtherRegulatoryRegionsSingle.rda (264 bytes security) (stored 0%)
  adding: data/otherRegulatoryRegionsTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/otherRegulatoryRegionsTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/PancreasIG.rda (264 bytes security) (deflated 0%)
  adding: data/PancreasIGtrack.rda (264 bytes security) (deflated 0%)
  adding: data/PancreasimprintedIG.rda (264 bytes security) (stored 0%)
  adding: data/PancreasimprintedIGtrack.rda (264 bytes security) (stored 0%)
  adding: data/promRMtrack.rda (264 bytes security) (deflated 0%)
  adding: data/promRMtrackE063.rda (264 bytes security) (deflated 0%)
  adding: data/psiGTex.rda (264 bytes security) (deflated 3%)
  adding: data/psiGTexTrackall.rda (264 bytes security) (deflated 3%)
  adding: data/psiGTexTrackSNP.rda (264 bytes security) (deflated 1%)
  adding: data/refGenesUCSC.rda (264 bytes security) (stored 0%)
  adding: data/regulationENSEMBLtrack.rda (264 bytes security) (stored 0%)
  adding: data/RegulatoryEvidenceBiomartAll.rda (264 bytes security) (stored 0%)
  adding: data/RegulatoryEvidenceBiomartMultiple.rda (264 bytes security) (stored 0%)
  adding: data/RegulatoryEvidenceBiomartSingle.rda (264 bytes security) (deflated 2%)
  adding: data/regulatoryEvidenceBiomartTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/regulatoryEvidenceBiomartTrackMultiple.rda (264 bytes security) (stored 0%)
  adding: data/regulatoryEvidenceBiomartTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/RegulatoryFeaturesBiomartAll.rda (264 bytes security) (stored 0%)
  adding: data/RegulatoryFeaturesBiomartMultiple.rda (264 bytes security) (stored 0%)
  adding: data/RegulatoryFeaturesBiomartSingle.rda (264 bytes security) (stored 0%)
  adding: data/regulatoryFeaturesBiomartTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/regulatoryFeaturesBiomartTrackMultiple.rda (264 bytes security) (stored 0%)
  adding: data/regulatoryFeaturesBiomartTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/RegulatorySegmentsBiomartAll.rda (264 bytes security) (stored 0%)
  adding: data/RegulatorySegmentsBiomartMultiple.rda (264 bytes security) (stored 0%)
  adding: data/RegulatorySegmentsBiomartSingle.rda (264 bytes security) (stored 0%)
  adding: data/regulatorySegmentsBiomartTrackAll.rda (264 bytes security) (stored 0%)
  adding: data/regulatorySegmentsBiomartTrackMultiple.rda (264 bytes security) (stored 0%)
  adding: data/regulatorySegmentsBiomartTrackSingle.rda (264 bytes security) (stored 0%)
  adding: data/repeatMaskerTrack.rda (264 bytes security) (stored 0%)
  adding: data/SegmentalDupsUCSC.rda (264 bytes security) (stored 0%)
  adding: data/snpBiomart.rda (264 bytes security) (stored 0%)
  adding: data/snpBiomarttrack.rda (264 bytes security) (stored 0%)
  adding: data/snptrack.rda (264 bytes security) (stored 0%)
  adding: data/snpUCSCtrack.rda (264 bytes security) (deflated 2%)
  adding: data/StomachIG.rda (264 bytes security) (stored 0%)
  adding: data/StomachIGtrack.rda (264 bytes security) (stored 0%)
  adding: data/strucBiomarttrack.rda (264 bytes security) (stored 0%)
  adding: data/structureBiomart.rda (264 bytes security) (stored 0%)
  adding: data/tfbsFANTOMtrack.rda (264 bytes security) (stored 0%)
  adding: data/transENSMBLtrack.rda (264 bytes security) (deflated 0%)
  adding: data/xenogenestrack.rda (264 bytes security) (stored 0%)
  adding: data/xenorefGenesUCSC.rda (264 bytes security) (stored 0%)
  adding: DESCRIPTION (264 bytes security) (deflated 44%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/coMET.pdf (264 bytes security) (deflated 15%)
  adding: doc/coMET.R (264 bytes security) (deflated 83%)
  adding: doc/coMET.Rnw (264 bytes security) (deflated 75%)
  adding: doc/index.html (264 bytes security) (deflated 57%)
  adding: extdata/ (304 bytes security) (stored 0%)
  adding: extdata/config_cyp1b1_zoom.txt (264 bytes security) (deflated 54%)
  adding: extdata/config_cyp1b1_zoom_4comet.txt (264 bytes security) (deflated 46%)
  adding: extdata/config_cyp1b1_zoom_4cometnopval.txt (264 bytes security) (deflated 40%)
  adding: extdata/config_cyp1b1_zoom_4cometnopval_Grch38.txt (264 bytes security) (deflated 47%)
  adding: extdata/config_cyp1b1_zoom_4nomatrix.txt (264 bytes security) (deflated 47%)
  adding: extdata/config_cyp1b1_zoom_4nomatrix_Grch38.txt (264 bytes security) (deflated 47%)
  adding: extdata/config_cyp1b1_zoom_4webserver.txt (264 bytes security) (deflated 45%)
  adding: extdata/config_cyp1b1_zoom_4webserver_Grch38.txt (264 bytes security) (deflated 46%)
  adding: extdata/config_gata55_larger_article.txt (264 bytes security) (deflated 54%)
  adding: extdata/config_gata55_larger_article_rev.txt (264 bytes security) (deflated 54%)
  adding: extdata/cyp1b1_infofile.bed (264 bytes security) (deflated 64%)
  adding: extdata/cyp1b1_infofile.txt (264 bytes security) (deflated 53%)
  adding: extdata/cyp1b1_infofile_bed.txt (264 bytes security) (deflated 64%)
  adding: extdata/cyp1b1_infofile_bed_v2.bed (264 bytes security) (deflated 70%)
  adding: extdata/cyp1b1_infofile_bed_v2.txt (264 bytes security) (deflated 70%)
  adding: extdata/cyp1b1_infofile_bed_v2_hg38.bed (264 bytes security) (deflated 79%)
  adding: extdata/cyp1b1_infofile_bed_v3.bed (264 bytes security) (deflated 75%)
  adding: extdata/cyp1b1_infofile_bed_v3.txt (264 bytes security) (deflated 80%)
  adding: extdata/cyp1b1_infofile_bed_v3_hg38.bed (264 bytes security) (deflated 74%)
  adding: extdata/cyp1b1_infofile_exprGene_region.txt (264 bytes security) (deflated 45%)
  adding: extdata/cyp1b1_infofile_exprGene_region_Grch38.txt (264 bytes security) (deflated 41%)
  adding: extdata/cyp1b1_infofile_exprGene_region_v2.csv (264 bytes security) (deflated 45%)
  adding: extdata/cyp1b1_infofile_Grch38.txt (264 bytes security) (deflated 55%)
  adding: extdata/cyp1b1_res37_cormatrix_list_BH05.txt (264 bytes security) (deflated 58%)
  adding: extdata/cyp1b1_res37_rawMatrix.txt (264 bytes security) (deflated 54%)
  adding: extdata/cyp1b1_zoom_plus_name_expr.pdf (264 bytes security) (deflated 9%)
  adding: extdata/datalist (264 bytes security) (deflated 32%)
  adding: extdata/gata4_55probes_info.txt (264 bytes security) (deflated 54%)
  adding: extdata/gata4_55probes_rawMatrix.txt (264 bytes security) (deflated 56%)
  adding: extdata/gata4_55probes_residuals.txt (264 bytes security) (deflated 56%)
  adding: extdata/gata4_95probes_info.txt (264 bytes security) (deflated 54%)
  adding: extdata/gata_comet_55probes_large_article.eps (264 bytes security) (deflated 92%)
  adding: extdata/gata_comet_55probes_large_article_gene.eps (264 bytes security) (deflated 92%)
  adding: extdata/gata_comet_55probes_large_article_rev.eps (264 bytes security) (deflated 92%)
  adding: extdata/JpegTables/ (304 bytes security) (stored 0%)
  adding: extdata/JpegTables/bindingMotifBiomart.jpg (264 bytes security) (deflated 9%)
  adding: extdata/JpegTables/BindingMotifsBiomart.jpg (264 bytes security) (deflated 6%)
  adding: extdata/JpegTables/ChromHMM.jpg (264 bytes security) (deflated 26%)
  adding: extdata/JpegTables/ChromHMM_coMET.jpg (264 bytes security) (deflated 14%)
  adding: extdata/JpegTables/ChromHMM_UCSC.jpg (264 bytes security) (deflated 8%)
  adding: extdata/JpegTables/eQTL.jpg (264 bytes security) (deflated 19%)
  adding: extdata/JpegTables/ISCATrack.jpg (264 bytes security) (deflated 27%)
  adding: extdata/JpegTables/ISCATrack_old.jpg (264 bytes security) (deflated 20%)
  adding: extdata/JpegTables/metQTL.jpg (264 bytes security) (deflated 21%)
  adding: extdata/JpegTables/OtherRegulatoryRegions.jpg (264 bytes security) (deflated 21%)
  adding: extdata/JpegTables/RegulatoryElementsENSEMBL.jpg (264 bytes security) (deflated 26%)
  adding: extdata/JpegTables/RegulatoryEvidence_1.jpg (264 bytes security) (deflated 7%)
  adding: extdata/JpegTables/RegulatoryEvidence_2.jpg (264 bytes security) (deflated 6%)
  adding: extdata/JpegTables/RegulatoryEvidence_3.jpg (264 bytes security) (deflated 12%)
  adding: extdata/JpegTables/RegulatoryFeaturesBiomart.jpg (264 bytes security) (deflated 17%)
  adding: extdata/JpegTables/RegulatorySegmentsBiomart.jpg (264 bytes security) (deflated 9%)
  adding: extdata/JpegTables/RoadMap15_RoadMap.jpg (264 bytes security) (deflated 5%)
  adding: extdata/JpegTables/RoadMap18_coMET.jpg (264 bytes security) (deflated 10%)
  adding: extdata/JpegTables/RoadMap18_RoadMap.jpg (264 bytes security) (deflated 5%)
  adding: extdata/JpegTables/RoadMap25_coMET.jpg (264 bytes security) (deflated 4%)
  adding: extdata/JpegTables/RoadMap25_RoadMap.jpg (264 bytes security) (deflated 2%)
  adding: extdata/JpegTables/structureBiomart.jpg (264 bytes security) (deflated 12%)
  adding: help/ (304 bytes security) (stored 0%)
  adding: help/aliases.rds (264 bytes security) (stored 0%)
  adding: help/AnIndex (264 bytes security) (deflated 79%)
  adding: help/coMET.rdb (264 bytes security) (deflated 2%)
  adding: help/coMET.rdx (264 bytes security) (deflated 1%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 80%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: INDEX (264 bytes security) (deflated 77%)
  adding: LICENSE (264 bytes security) (deflated 62%)
  adding: MD5 (264 bytes security) (deflated 57%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/data.rds (264 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
  adding: Meta/package.rds (264 bytes security) (stored 0%)
  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 70%)
  adding: NEWS (264 bytes security) (deflated 66%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/coMET (264 bytes security) (deflated 41%)
  adding: R/coMET.rdb (264 bytes security) (deflated 1%)
  adding: R/coMET.rdx (264 bytes security) (stored 0%)
  adding: unitTests/ (304 bytes security) (stored 0%)
  adding: unitTests/ChangeLog.txt (264 bytes security) (stored 0%)
  adding: unitTests/Citation.txt (264 bytes security) (deflated 64%)
  adding: unitTests/test_chrUCSC2ENSEMBL.R (264 bytes security) (deflated 17%)