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BioC 3.5: CHECK report for BrowserVizDemo on malbec2

This page was generated on 2017-08-16 13:16:35 -0400 (Wed, 16 Aug 2017).

Package 153/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BrowserVizDemo 1.8.1
Paul Shannon
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/BrowserVizDemo
Last Changed Rev: 131672 / Revision: 131943
Last Changed Date: 2017-07-31 13:55:46 -0400 (Mon, 31 Jul 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...
veracruz2 OS X 10.11.6 El Capitan / x86_64 ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED...

Summary

Package: BrowserVizDemo
Version: 1.8.1
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings BrowserVizDemo_1.8.1.tar.gz
StartedAt: 2017-08-15 21:36:44 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 21:37:15 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 30.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: BrowserVizDemo.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings BrowserVizDemo_1.8.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/BrowserVizDemo.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BrowserVizDemo/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BrowserVizDemo’ version ‘1.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BrowserVizDemo’ can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘BrowserViz::toJSON’ by ‘jsonlite::toJSON’ when loading ‘BrowserVizDemo’
See ‘/home/biocbuild/bbs-3.5-bioc/meat/BrowserVizDemo.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-bioc/meat/BrowserVizDemo.Rcheck/00check.log’
for details.


BrowserVizDemo.Rcheck/00install.out:

* installing *source* package ‘BrowserVizDemo’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘BrowserViz::toJSON’ by ‘jsonlite::toJSON’ when loading ‘BrowserVizDemo’
Creating a new generic function for ‘plot’ in package ‘BrowserVizDemo’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘BrowserViz::toJSON’ by ‘jsonlite::toJSON’ when loading ‘BrowserVizDemo’
* DONE (BrowserVizDemo)

BrowserVizDemo.Rcheck/BrowserVizDemo-Ex.timings:

nameusersystemelapsed
BrowserVizDemo-class0.3720.0041.997