Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for BPRMeth on tokay2

This page was generated on 2017-08-16 13:26:26 -0400 (Wed, 16 Aug 2017).

Package 146/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BPRMeth 1.2.0
Chantriolnt-Andreas Kapourani
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/BPRMeth
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BPRMeth
Version: 1.2.0
Command: rm -rf BPRMeth.buildbin-libdir BPRMeth.Rcheck && mkdir BPRMeth.buildbin-libdir BPRMeth.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BPRMeth.buildbin-libdir BPRMeth_1.2.0.tar.gz >BPRMeth.Rcheck\00install.out 2>&1 && cp BPRMeth.Rcheck\00install.out BPRMeth-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=BPRMeth.buildbin-libdir --install="check:BPRMeth-install.out" --force-multiarch --no-vignettes --timings BPRMeth_1.2.0.tar.gz
StartedAt: 2017-08-15 22:22:48 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 22:28:56 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 368.2 seconds
RetCode: 0
Status:  OK  
CheckDir: BPRMeth.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BPRMeth.buildbin-libdir BPRMeth.Rcheck && mkdir BPRMeth.buildbin-libdir BPRMeth.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BPRMeth.buildbin-libdir BPRMeth_1.2.0.tar.gz >BPRMeth.Rcheck\00install.out 2>&1 && cp BPRMeth.Rcheck\00install.out BPRMeth-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=BPRMeth.buildbin-libdir --install="check:BPRMeth-install.out" --force-multiarch --no-vignettes --timings BPRMeth_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/BPRMeth.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BPRMeth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BPRMeth' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BPRMeth' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following directory looks like a leftover from 'knitr':
  'figure'
Please remove from your package.
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
boxplot_cluster_gex 33.47   0.01   33.48
bpr_cluster_wrap    30.67   0.00   30.81
plot_cluster_prof   29.66   0.00   29.66
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
boxplot_cluster_gex 34.08      0   34.08
plot_cluster_prof   33.66      0   33.66
bpr_cluster_wrap    32.75      0   32.75
bpr_optimize         5.29      0    5.30
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/BPRMeth.Rcheck/00check.log'
for details.


BPRMeth.Rcheck/00install.out:


install for i386

* installing *source* package 'BPRMeth' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BPRMeth' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BPRMeth' as BPRMeth_1.2.0.zip
* DONE (BPRMeth)

BPRMeth.Rcheck/examples_i386/BPRMeth-Ex.timings:

nameusersystemelapsed
boxplot_cluster_gex33.47 0.0133.48
bpr_cluster_wrap30.67 0.0030.81
bpr_optimize4.120.004.12
bpr_predict_wrap2.380.002.38
create_basis000
create_methyl_region1.280.021.70
create_prom_region0.230.000.24
eval_functions0.020.000.01
plot_cluster_prof29.66 0.0029.66
plot_fitted_profiles3.150.003.15
plot_scatter_gex3.450.023.47
pool_bs_seq_rep0.600.010.61
predict_model_gex000
preprocess_bs_seq0.360.000.36
preprocess_final_HTS_data0.720.000.72
process_haib_caltech_wrap0.710.000.70
read_bs_bismark_cov000
read_bs_encode_haib0.220.000.22
read_chrom_size0.000.020.02
read_encode_cgi000
read_rna_encode_caltech0.170.000.17
train_model_gex0.030.000.03

BPRMeth.Rcheck/examples_x64/BPRMeth-Ex.timings:

nameusersystemelapsed
boxplot_cluster_gex34.08 0.0034.08
bpr_cluster_wrap32.75 0.0032.75
bpr_optimize5.290.005.30
bpr_predict_wrap3.030.003.03
create_basis000
create_methyl_region0.880.030.91
create_prom_region0.360.000.36
eval_functions0.010.000.01
plot_cluster_prof33.66 0.0033.66
plot_fitted_profiles3.330.003.33
plot_scatter_gex3.280.003.28
pool_bs_seq_rep1.050.021.06
predict_model_gex0.010.000.02
preprocess_bs_seq0.270.010.28
preprocess_final_HTS_data0.560.000.56
process_haib_caltech_wrap0.520.000.52
read_bs_bismark_cov000
read_bs_encode_haib0.140.020.15
read_chrom_size000
read_encode_cgi000
read_rna_encode_caltech0.160.010.17
train_model_gex0.010.000.02