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BioC experimental data: CHECK report for miRNATarget on malbec1

This page was generated on 2017-04-15 16:49:33 -0400 (Sat, 15 Apr 2017).

Package 192/310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.12.0
Y-h. Taguchi
Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/miRNATarget
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: miRNATarget
Version: 1.12.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.12.0.tar.gz
StartedAt: 2017-04-15 11:05:58 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 11:06:40 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 41.9 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0160.0000.014
HS_refseq_to_affy_hc_g1100.0040.0000.005
HS_refseq_to_affy_hg_focus0.0200.0000.018
HS_refseq_to_affy_hg_u133_plus_20.0760.0000.074
HS_refseq_to_affy_hg_u133a0.0400.0000.039
HS_refseq_to_affy_hg_u133a_20.0480.0000.050
HS_refseq_to_affy_hg_u133b0.0200.0000.021
HS_refseq_to_affy_hg_u95a0.0240.0000.025
HS_refseq_to_affy_hg_u95av20.0200.0000.024
HS_refseq_to_affy_hg_u95b0.0680.0000.067
HS_refseq_to_affy_hg_u95c0.0080.0000.010
HS_refseq_to_affy_hg_u95d0.0080.0000.006
HS_refseq_to_affy_hg_u95e0.0080.0040.010
HS_refseq_to_affy_huex_1_0_st_v21.1120.0201.132
HS_refseq_to_affy_hugene_1_0_st_v10.0520.0000.051
HS_refseq_to_affy_hugenefl0.0160.0000.014
HS_refseq_to_affy_u133_x3p0.0720.0000.072
HS_refseq_to_agilent_cgh_44b0.0120.0000.014
HS_refseq_to_agilent_wholegenome0.0720.0040.077
HS_refseq_to_canonical_transcript_stable_id0.0720.0000.072
HS_refseq_to_ccds0.0400.0000.039
HS_refseq_to_codelink0.0400.0040.042
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0040.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0040.0000.002
HS_refseq_to_embl0.7760.0080.784
HS_refseq_to_ensembl_exon_id0.0040.0000.002
HS_refseq_to_ensembl_gene_id0.0440.0120.054
HS_refseq_to_ensembl_peptide_id0.0480.0000.050
HS_refseq_to_ensembl_transcript_id0.0560.0000.055
HS_refseq_to_entrezgene0.0520.0000.050
HS_refseq_to_hgnc_id0.0480.0000.047
HS_refseq_to_hgnc_symbol0.0520.0000.050
HS_refseq_to_hgnc_transcript_name0.0560.0000.056
HS_refseq_to_illumina_humanht_120.0560.0000.055
HS_refseq_to_illumina_humanwg_6_v10.1440.0000.146
HS_refseq_to_illumina_humanwg_6_v20.0440.0000.044
HS_refseq_to_illumina_humanwg_6_v30.0520.0000.051
HS_refseq_to_interpro0.1240.0000.123
HS_refseq_to_ipi0.120.000.12
HS_refseq_to_merops0.0040.0000.004
HS_refseq_to_pdb0.2480.0000.247
HS_refseq_to_pfam0.0680.0000.066
HS_refseq_to_phalanx_onearray0.040.000.04
HS_refseq_to_protein_id0.9800.0000.977
HS_refseq_to_refseq_dna0.0640.0000.064
HS_refseq_to_refseq_genomic0.0000.0000.002
HS_refseq_to_refseq_peptide0.1120.0000.113
HS_refseq_to_rfam0.0040.0000.002
HS_refseq_to_rfam_gene_name0.0000.0000.001
HS_refseq_to_rfam_transcript_name0.0000.0000.002
HS_refseq_to_smart0.0360.0000.037
HS_refseq_to_tigrfam0.0040.0000.006
HS_refseq_to_ucsc0.1040.0000.103
HS_refseq_to_unigene0.0680.0000.067
HS_refseq_to_uniprot_genename0.0440.0040.049
HS_refseq_to_uniprot_genename_transcript_name0.0000.0000.002
HS_refseq_to_uniprot_sptrembl0.0040.0000.002
HS_refseq_to_uniprot_swissprot0.0000.0000.002
HS_refseq_to_uniprot_swissprot_accession0.0000.0000.002
HS_refseq_to_wikigene_id0.0040.0000.001
HS_refseq_to_wikigene_name0.1200.0000.121
MM_conv_id0.0040.0000.003
MM_refseq_to_affy_mg_u74a0.0200.0000.018
MM_refseq_to_affy_mg_u74av20.0160.0000.016
MM_refseq_to_affy_mg_u74b0.0160.0000.014
MM_refseq_to_affy_mg_u74bv20.0160.0000.014
MM_refseq_to_affy_mg_u74c0.0040.0000.005
MM_refseq_to_affy_mg_u74cv20.1600.0000.159
MM_refseq_to_affy_moe430a0.0280.0000.027
MM_refseq_to_affy_moe430b0.0160.0000.014
MM_refseq_to_affy_moex_1_0_st_v10.3400.0000.342
MM_refseq_to_affy_mogene_1_0_st_v10.0360.0000.038
MM_refseq_to_affy_mouse430_20.0480.0000.046
MM_refseq_to_affy_mouse430a_20.0320.0000.032
MM_refseq_to_affy_mu11ksuba0.0120.0000.011
MM_refseq_to_affy_mu11ksubb0.0080.0000.007
MM_refseq_to_agilent_wholegenome0.0520.0040.056
MM_refseq_to_canonical_transcript_stable_id0.0560.0000.054
MM_refseq_to_ccds0.0240.0040.028
MM_refseq_to_codelink0.0320.0000.029
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0000.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0040.002
MM_refseq_to_embl0.2680.0040.270
MM_refseq_to_ensembl_exon_id0.0000.0000.002
MM_refseq_to_ensembl_gene_id0.0280.0000.031
MM_refseq_to_ensembl_peptide_id0.0280.0000.032
MM_refseq_to_ensembl_transcript_id0.0320.0000.034
MM_refseq_to_entrezgene0.0280.0000.031
MM_refseq_to_fantom0.0880.0000.087
MM_refseq_to_illumina_mousewg_6_v10.0440.0000.041
MM_refseq_to_illumina_mousewg_6_v20.0440.0000.045
MM_refseq_to_interpro0.0960.0000.094
MM_refseq_to_ipi0.0040.0000.002
MM_refseq_to_merops0.0760.0000.078
MM_refseq_to_mgi_id0.0360.0000.035
MM_refseq_to_mgi_symbol0.0360.0000.034
MM_refseq_to_mgi_transcript_name0.0360.0000.036
MM_refseq_to_pdb0.0080.0000.009
MM_refseq_to_pfam0.0560.0000.054
MM_refseq_to_phalanx_onearray0.0320.0000.033
MM_refseq_to_protein_id0.2920.0040.295
MM_refseq_to_refseq_dna0.1440.0000.144
MM_refseq_to_refseq_peptide0.0640.0000.063
MM_refseq_to_rfam0.0040.0000.002
MM_refseq_to_rfam_gene_name0.0000.0000.001
MM_refseq_to_rfam_transcript_name0.0000.0000.001
MM_refseq_to_smart0.0280.0000.025
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.0320.0000.032
MM_refseq_to_unigene0.0440.0000.042
MM_refseq_to_uniprot_genename0.0320.0000.030
MM_refseq_to_uniprot_genename_transcript_name0.0000.0000.001
MM_refseq_to_uniprot_sptrembl0.0000.0040.002
MM_refseq_to_uniprot_swissprot0.0000.0040.002
MM_refseq_to_uniprot_swissprot_accession0.0000.0000.002
MM_refseq_to_wikigene_id0.0040.0000.001
MM_refseq_to_wikigene_name0.0240.0040.030
TBL20.8520.0240.878
TBL2_HS1.3600.0561.415
TBL2_MM0.7640.0240.788
conv_id0.0000.0000.003
id_conv0.0280.0000.029