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BioC 3.4: BUILD BIN report for Biostrings on tokay1

This page was generated on 2017-04-15 16:14:26 -0400 (Sat, 15 Apr 2017).

Package 129/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Biostrings 2.42.1
H. Pagès
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/Biostrings
Last Changed Rev: 124552 / Revision: 128728
Last Changed Date: 2016-11-29 02:35:47 -0500 (Tue, 29 Nov 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Biostrings
Version: 2.42.1
Command: cd Biostrings.buildbin-libdir/Biostrings && zip -r ../../Biostrings_2.42.1.zip . & cd ../..
StartedAt: 2017-04-15 01:53:42 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 01:54:24 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 41.1 seconds
RetCode: 0
Status:  OK  
PackageFile: Biostrings_2.42.1.zip
PackageFileSize: 25.9 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd Biostrings.buildbin-libdir/Biostrings && zip -r ../../Biostrings_2.42.1.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: data/ (324 bytes security) (stored 0%)
  adding: data/BLOSUM100.rda (284 bytes security) (stored 0%)
  adding: data/BLOSUM45.rda (284 bytes security) (stored 0%)
  adding: data/BLOSUM50.rda (284 bytes security) (stored 0%)
  adding: data/BLOSUM62.rda (284 bytes security) (stored 0%)
  adding: data/BLOSUM80.rda (284 bytes security) (stored 0%)
  adding: data/HNF4alpha.rda (284 bytes security) (stored 0%)
  adding: data/PAM120.rda (284 bytes security) (stored 0%)
  adding: data/PAM250.rda (284 bytes security) (stored 0%)
  adding: data/PAM30.rda (284 bytes security) (stored 0%)
  adding: data/PAM40.rda (284 bytes security) (stored 0%)
  adding: data/PAM70.rda (284 bytes security) (stored 0%)
  adding: data/phiX174Phage.rda (284 bytes security) (deflated 1%)
  adding: data/srPhiX174.rda (284 bytes security) (deflated 4%)
  adding: data/yeastSEQCHR1.rda (284 bytes security) (deflated 0%)
  adding: DESCRIPTION (284 bytes security) (deflated 52%)
  adding: doc/ (324 bytes security) (stored 0%)
  adding: doc/Biostrings2Classes.pdf (284 bytes security) (deflated 6%)
  adding: doc/Biostrings2Classes.R (284 bytes security) (deflated 84%)
  adding: doc/Biostrings2Classes.Rnw (284 bytes security) (deflated 63%)
  adding: doc/BiostringsQuickOverview.pdf (284 bytes security) (deflated 6%)
  adding: doc/BiostringsQuickOverview.Rnw (284 bytes security) (deflated 73%)
  adding: doc/index.html (284 bytes security) (deflated 78%)
  adding: doc/matchprobes.pdf (284 bytes security) (deflated 8%)
  adding: doc/matchprobes.R (284 bytes security) (deflated 70%)
  adding: doc/matchprobes.Rnw (284 bytes security) (deflated 62%)
  adding: doc/MultipleAlignments.pdf (284 bytes security) (deflated 10%)
  adding: doc/MultipleAlignments.R (284 bytes security) (deflated 79%)
  adding: doc/MultipleAlignments.Rnw (284 bytes security) (deflated 63%)
  adding: doc/PairwiseAlignments.pdf (284 bytes security) (deflated 15%)
  adding: doc/PairwiseAlignments.R (284 bytes security) (deflated 84%)
  adding: doc/PairwiseAlignments.Rnw (284 bytes security) (deflated 76%)
  adding: extdata/ (324 bytes security) (stored 0%)
  adding: extdata/dm3_upstream2000.fa.gz (284 bytes security) (deflated 3%)
  adding: extdata/fastaEx.fa (284 bytes security) (deflated 46%)
  adding: extdata/hg18chr8_gap.txt (284 bytes security) (deflated 55%)
  adding: extdata/hg18chrY_gap.txt (284 bytes security) (deflated 61%)
  adding: extdata/msx2_mRNA.aln (284 bytes security) (deflated 87%)
  adding: extdata/Phylip.txt (284 bytes security) (deflated 68%)
  adding: extdata/README (284 bytes security) (deflated 35%)
  adding: extdata/Sc.fa (284 bytes security) (deflated 64%)
  adding: extdata/someORF.fa (284 bytes security) (deflated 70%)
  adding: extdata/someORF.fa.gz (284 bytes security) (deflated 1%)
  adding: extdata/Sp.fa (284 bytes security) (deflated 62%)
  adding: extdata/s_1_sequence.txt (284 bytes security) (deflated 72%)
  adding: help/ (324 bytes security) (stored 0%)
  adding: help/aliases.rds (284 bytes security) (stored 0%)
  adding: help/AnIndex (284 bytes security) (deflated 88%)
  adding: help/Biostrings.rdb (284 bytes security) (deflated 1%)
  adding: help/Biostrings.rdx (284 bytes security) (stored 0%)
  adding: help/paths.rds (284 bytes security) (stored 0%)
  adding: html/ (324 bytes security) (stored 0%)
  adding: html/00Index.html (284 bytes security) (deflated 92%)
  adding: html/R.css (284 bytes security) (deflated 75%)
  adding: include/ (324 bytes security) (stored 0%)
  adding: include/Biostrings_defines.h (284 bytes security) (deflated 69%)
  adding: include/Biostrings_interface.h (284 bytes security) (deflated 65%)
  adding: include/_Biostrings_stubs.c (284 bytes security) (deflated 77%)
  adding: INDEX (284 bytes security) (deflated 68%)
  adding: libs/ (324 bytes security) (stored 0%)
  adding: libs/i386/ (324 bytes security) (stored 0%)
  adding: libs/i386/Biostrings.dll (284 bytes security) (deflated 58%)
  adding: libs/x64/ (324 bytes security) (stored 0%)
  adding: libs/x64/Biostrings.dll (284 bytes security) (deflated 56%)
  adding: MD5 (284 bytes security) (deflated 48%)
  adding: Meta/ (324 bytes security) (stored 0%)
  adding: Meta/data.rds (284 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (284 bytes security) (deflated 1%)
  adding: Meta/links.rds (284 bytes security) (deflated 0%)
  adding: Meta/nsInfo.rds (284 bytes security) (stored 0%)
  adding: Meta/package.rds (284 bytes security) (stored 0%)
  adding: Meta/Rd.rds (284 bytes security) (stored 0%)
  adding: Meta/vignette.rds (284 bytes security) (stored 0%)
  adding: NAMESPACE (284 bytes security) (deflated 75%)
  adding: NEWS (284 bytes security) (deflated 65%)
  adding: R/ (324 bytes security) (stored 0%)
  adding: R/Biostrings (284 bytes security) (deflated 41%)
  adding: R/Biostrings.rdb (284 bytes security) (deflated 34%)
  adding: R/Biostrings.rdx (284 bytes security) (deflated 6%)
  adding: unitTests/ (324 bytes security) (stored 0%)
  adding: unitTests/test_findPalindromes.R (284 bytes security) (deflated 85%)
  adding: unitTests/test_matchDNAPattern.R.FIXME (284 bytes security) (deflated 78%)
  adding: unitTests/test_matchPDict.R (284 bytes security) (deflated 76%)
  adding: unitTests/test_MultipleAlignment.R (284 bytes security) (deflated 88%)
  adding: unitTests/test_pairwiseAlignment.R (284 bytes security) (deflated 88%)
  adding: unitTests/test_twoWayAlphabetFrequency.R (284 bytes security) (deflated 78%)
  adding: unitTests/test_XString.R (284 bytes security) (deflated 68%)
  adding: unitTests/test_XStringSet.R (284 bytes security) (deflated 74%)
  adding: unitTests/test_XStringSetList.R (284 bytes security) (deflated 73%)