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BioC 3.4: BUILD BIN report for BaalChIP on tokay1

This page was generated on 2017-04-15 16:21:30 -0400 (Sat, 15 Apr 2017).

Package 75/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BaalChIP 1.0.0
Ines de Santiago
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/BaalChIP
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BaalChIP
Version: 1.0.0
Command: cd BaalChIP.buildbin-libdir/BaalChIP && zip -r ../../BaalChIP_1.0.0.zip . & cd ../..
StartedAt: 2017-04-15 01:51:49 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 01:52:36 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 47.9 seconds
RetCode: 0
Status:  OK  
PackageFile: BaalChIP_1.0.0.zip
PackageFileSize: 212.2 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd BaalChIP.buildbin-libdir/BaalChIP && zip -r ../../BaalChIP_1.0.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: data/ (324 bytes security) (stored 0%)
  adding: data/datalist (284 bytes security) (deflated 14%)
  adding: data/Rdata.rdb (284 bytes security) (deflated 2%)
  adding: data/Rdata.rds (284 bytes security) (stored 0%)
  adding: data/Rdata.rdx (284 bytes security) (stored 0%)
  adding: DESCRIPTION (284 bytes security) (deflated 42%)
  adding: doc/ (324 bytes security) (stored 0%)
  adding: doc/BaalChIP.html (284 bytes security) (deflated 40%)
  adding: doc/BaalChIP.R (284 bytes security) (deflated 81%)
  adding: doc/BaalChIP.Rmd (284 bytes security) (deflated 68%)
  adding: doc/index.html (284 bytes security) (deflated 58%)
  adding: extra/ (324 bytes security) (stored 0%)
  adding: extra/get.overlaps.v2_chrXY.perl (284 bytes security) (deflated 70%)
  adding: extra/run_simulations.sh (284 bytes security) (deflated 60%)
  adding: help/ (324 bytes security) (stored 0%)
  adding: help/aliases.rds (284 bytes security) (stored 0%)
  adding: help/AnIndex (284 bytes security) (deflated 73%)
  adding: help/BaalChIP.rdb (284 bytes security) (deflated 1%)
  adding: help/BaalChIP.rdx (284 bytes security) (stored 0%)
  adding: help/paths.rds (284 bytes security) (stored 0%)
  adding: html/ (324 bytes security) (stored 0%)
  adding: html/00Index.html (284 bytes security) (deflated 79%)
  adding: html/R.css (284 bytes security) (deflated 75%)
  adding: INDEX (284 bytes security) (deflated 66%)
  adding: MD5 (284 bytes security) (deflated 58%)
  adding: Meta/ (324 bytes security) (stored 0%)
  adding: Meta/data.rds (284 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (284 bytes security) (stored 0%)
  adding: Meta/links.rds (284 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (284 bytes security) (stored 0%)
  adding: Meta/package.rds (284 bytes security) (stored 0%)
  adding: Meta/Rd.rds (284 bytes security) (stored 0%)
  adding: Meta/vignette.rds (284 bytes security) (stored 0%)
  adding: NAMESPACE (284 bytes security) (deflated 66%)
  adding: NEWS (284 bytes security) (deflated 21%)
  adding: R/ (324 bytes security) (stored 0%)
  adding: R/BaalChIP (284 bytes security) (deflated 41%)
  adding: R/BaalChIP.rdb (284 bytes security) (deflated 24%)
  adding: R/BaalChIP.rdx (284 bytes security) (deflated 1%)
  adding: test/ (324 bytes security) (stored 0%)
  adding: test/AMOVC_hetSNP.txt (284 bytes security) (deflated 60%)
  adding: test/BaalChIP-Ex.timings (284 bytes security) (deflated 59%)
  adding: test/bamFiles/ (324 bytes security) (stored 0%)
  adding: test/bamFiles/AMOVC_1.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_1.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/AMOVC_1_gDNA.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_1_gDNA.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/AMOVC_2.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_2.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/AMOVC_2_gDNA.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/AMOVC_2_gDNA.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PAX5_Rep1.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_PAX5_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PAX5_Rep2.bam (284 bytes security) (stored 0%)
  adding: test/bamFiles/GM12891_PAX5_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_POL2_Rep1.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_POL2_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_POL2_Rep2.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_POL2_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PU1_Rep1.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_PU1_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_PU1_Rep2.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/GM12891_PU1_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_TAF1_Rep1.bam (284 bytes security) (stored 0%)
  adding: test/bamFiles/GM12891_TAF1_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/GM12891_TAF1_Rep2.bam (284 bytes security) (stored 0%)
  adding: test/bamFiles/GM12891_TAF1_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cFOS_Rep1.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cFOS_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cFOS_Rep2.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cFOS_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cMYC_Rep1.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cMYC_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_cMYC_Rep2.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_cMYC_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_POL2_Rep1.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_POL2_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_POL2_Rep2.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_POL2_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_STAT3_Rep1.bam (284 bytes security) (stored 0%)
  adding: test/bamFiles/MCF7_STAT3_Rep1.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/MCF7_STAT3_Rep2.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/MCF7_STAT3_Rep2.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_1.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_1.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_1_gDNA.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_1_gDNA.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_2.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_2.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bamFiles/TaT1_2_gDNA.test.bam (284 bytes security) (deflated 0%)
  adding: test/bamFiles/TaT1_2_gDNA.test.bam.bai (284 bytes security) (deflated 100%)
  adding: test/bedFiles/ (324 bytes security) (stored 0%)
  adding: test/bedFiles/AMOVC_peaks_example.bed (284 bytes security) (deflated 62%)
  adding: test/bedFiles/GM12891_PAX5.bed (284 bytes security) (deflated 69%)
  adding: test/bedFiles/GM12891_POL2.bed (284 bytes security) (deflated 68%)
  adding: test/bedFiles/GM12891_POU2F2.bed (284 bytes security) (deflated 68%)
  adding: test/bedFiles/GM12891_PU1.bed (284 bytes security) (deflated 67%)
  adding: test/bedFiles/GM12891_TAF1.bed (284 bytes security) (deflated 65%)
  adding: test/bedFiles/GM12891_YY1.bed (284 bytes security) (deflated 63%)
  adding: test/bedFiles/MCF7_cFOS.bed (284 bytes security) (deflated 70%)
  adding: test/bedFiles/MCF7_cMYC.bed (284 bytes security) (deflated 69%)
  adding: test/bedFiles/MCF7_POL2.bed (284 bytes security) (deflated 69%)
  adding: test/bedFiles/MCF7_STAT3.bed (284 bytes security) (deflated 70%)
  adding: test/bedFiles/TaT1_peaks_example.bed (284 bytes security) (deflated 62%)
  adding: test/exampleChIP.tsv (284 bytes security) (deflated 79%)
  adding: test/exampleChIP1.tsv (284 bytes security) (deflated 79%)
  adding: test/exampleChIP2.tsv (284 bytes security) (deflated 62%)
  adding: test/GM12891_hetSNP.txt (284 bytes security) (deflated 58%)
  adding: test/MCF7_hetSNP.txt (284 bytes security) (deflated 58%)
  adding: test/simuloutput/ (324 bytes security) (stored 0%)
  adding: test/simuloutput/c67c6ec6c433_aln32.bam (284 bytes security) (deflated 22%)
  adding: test/simuloutput/c67c6ec6c433_aln32.bam.bai (284 bytes security) (deflated 100%)
  adding: test/simuloutput/c67c6ec6c433_aln32.fasta (284 bytes security) (deflated 93%)
  adding: test/simuloutput/c67c6ec6c433_aln32.fasta.sam (284 bytes security) (deflated 97%)
  adding: test/simuloutput/c67c6ec6c433_aln32_snplist.txt (284 bytes security) (deflated 63%)
  adding: test/simuloutput/c67c6ec6c433_aln34.bam (284 bytes security) (deflated 21%)
  adding: test/simuloutput/c67c6ec6c433_aln34.bam.bai (284 bytes security) (deflated 100%)
  adding: test/simuloutput/c67c6ec6c433_aln34.fasta (284 bytes security) (deflated 93%)
  adding: test/simuloutput/c67c6ec6c433_aln34.fasta.sam (284 bytes security) (deflated 94%)
  adding: test/simuloutput/c67c6ec6c433_aln36.bam (284 bytes security) (deflated 23%)
  adding: test/simuloutput/c67c6ec6c433_aln36.bam.bai (284 bytes security) (deflated 100%)
  adding: test/simuloutput/c67c6ec6c433_aln36.fasta (284 bytes security) (deflated 93%)
  adding: test/simuloutput/c67c6ec6c433_aln36.fasta.sam (284 bytes security) (deflated 94%)
  adding: test/simuloutput/c67c6ec6c433_snplist.txt (284 bytes security) (deflated 63%)
  adding: test/TaT1_hetSNP.txt (284 bytes security) (deflated 59%)
  adding: unitTests/ (324 bytes security) (stored 0%)
  adding: unitTests/test_get_allele_counts.R (284 bytes security) (deflated 56%)