Back to the "Multiple platform build/check report"

BioC experimental data: BUILD report for yriMulti on moscato2

This page was generated on 2016-10-08 19:32:00 -0700 (Sat, 08 Oct 2016).

Package 292/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
yriMulti 0.2.2
VJ Carey
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/yriMulti
Last Changed Rev: 3774 / Revision: 3935
Last Changed Date: 2016-05-15 13:23:24 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: yriMulti
Version: 0.2.2
Command: chmod a+r yriMulti -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data yriMulti
StartedAt: 2016-10-08 10:17:32 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 10:22:17 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 285.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r yriMulti -R && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data yriMulti
###
##############################################################################
##############################################################################


* checking for file 'yriMulti/DESCRIPTION' ... OK
* preparing 'yriMulti':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
gethost: 11004
[khttp_connect_file] fail to open file (HTTP code: 0).
gethost: 11004
[khttp_connect_file] fail to open file (HTTP code: 0).
gethost: 11004
[khttp_connect_file] fail to open file (HTTP code: 0).
Quitting from lines 109-112 (yriMulti.Rmd) 
Error: processing vignette 'yriMulti.Rmd' failed with diagnostics:
scanVcf: failed to open file
  path: http://1000genomes.s3.amazonaws.com/release/20130502/ALL.chr20.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz
Execution halted