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BioC experimental data: CHECK report for pRolocdata on moscato2

This page was generated on 2016-10-08 19:31:11 -0700 (Sat, 08 Oct 2016).

Package 211/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.10.0
Laurent Gatto
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/pRolocdata
Last Changed Rev: 3760 / Revision: 3935
Last Changed Date: 2016-05-03 14:35:06 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 

Summary

Package: pRolocdata
Version: 1.10.0
Command: rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.10.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.10.0.tar.gz
StartedAt: 2016-10-08 13:16:29 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 13:22:29 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 359.3 seconds
RetCode: 0
Status:  OK  
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.10.0.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/pRolocdata.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pRolocdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRolocdata' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pRolocdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 24.6Mb
  sub-directories of 1Mb or more:
    data      8.2Mb
    extdata  16.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
mulvey2015 5.32   0.04    8.55
fabre2015  4.97   0.16   50.17
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
mulvey2015 7.39   0.09    8.09
fabre2015  5.97   0.20   19.13
groen2014  5.46   0.00    5.47
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/pRolocdata.Rcheck/00check.log'
for details.


pRolocdata.Rcheck/00install.out:


install for i386

* installing *source* package 'pRolocdata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'pRolocdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pRolocdata' as pRolocdata_1.10.0.zip
* DONE (pRolocdata)

pRolocdata.Rcheck/examples_i386/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.040.000.05
andy20110.210.000.20
at_chloro0.130.000.74
dunkley20060.030.010.04
fabre2015 4.97 0.1650.17
foster20060.060.000.06
groen20143.640.013.67
hall20090.250.020.26
havugimana20120.530.000.53
hyperLOPIT20150.180.020.20
kirkwood20130.070.000.07
kristensen20120.030.000.03
mulvey20155.320.048.55
nikolovski20120.460.021.46
nikolovski20140.330.000.33
pRolocdata0.010.000.01
pRolocmetadata0.020.010.03
tan20090.030.000.03
trotter20100.230.020.25

pRolocdata.Rcheck/examples_x64/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.040.000.05
andy20110.080.000.08
at_chloro0.170.020.19
dunkley20060.020.000.01
fabre2015 5.97 0.2019.13
foster20060.050.000.05
groen20145.460.005.47
hall20090.170.030.21
havugimana20120.510.000.51
hyperLOPIT20150.100.020.11
kirkwood20130.060.000.06
kristensen20120.030.000.04
mulvey20157.390.098.09
nikolovski20120.730.021.37
nikolovski20140.360.000.36
pRolocdata0.020.000.01
pRolocmetadata0.010.010.04
tan20090.020.020.03
trotter20100.280.060.34